645: CASP ROLL Target R0023

Closed since over 13 years ago

Summary

• Created: October 19, 2012
• Expires: October 29, 2012 at 21:00 UTC
• Max points: 100

Description

Another CASP ROLL target. We are again providing you with 3 very different templates for now, and will give you with some server predictions once they are released. More details about this CASP target are in the puzzle comments.

Top groups

• 1. Anthropic Dreams 100 pts. 10,351
• 2. Contenders 85 pts. 10,315
• 3. Go Science 71 pts. 10,313
• 4. Beta Folders 60 pts. 10,274
• 5. foldeRNA 49 pts. 10,265
• 6. L'Alliance Francophone 41 pts. 10,128
• 7. Deleted group pts. 10,108
• 8. Void Crushers 27 pts. 10,086
• 9. Gargleblasters 22 pts. 10,046
• 10. Brony@Home 17 pts. 9,890

Top soloists

• 61. weitzen 32 pts. 9,861
• 62. pvc78 31 pts. 9,841
• 63. goastano 30 pts. 9,828
• 64. Deleted player pts. 9,811
• 65. Deleted player pts. 9,810
• 66. alwen 28 pts. 9,809
• 67. cbwest 28 pts. 9,792
• 68. Tac1 27 pts. 9,791
• 69. Wooz 27 pts. 9,786
• 70. Deleted player 26 pts. 9,780

Comments

[beta_helix]

Here is the CASP link for this target (showing the amino acid sequence):
http://predictioncenter.org/casproll/target.cgi?id=66
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Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valines at residues 68 & 43 are highly predicted to be part of a sheet. However, the Valine at residue 25 is not predicted to be anything!

The above predictions are already on the starting model (based on the horizontal lines in the above figure).
__________________

Link to template PDBs:

http://www.pdb.org/pdb/explore/explore.do?structureId=1sji http://www.pdb.org/pdb/explore/explore.do?structureId=2eua http://www.pdb.org/pdb/explore/explore.do?structureId=3ii2