Placeholder image of a protein
Icon representing a puzzle

651: Electron Density for CASP10 Target T0691 Round 2

Closed since over 13 years ago

Advanced Overall Prediction Electron Density

Summary

Created
November 10, 2012
Expires
Max points
100
Description

This is the second round of the density version of the CASP10 target T0691. This time, we've given you server models as starting points, and the density has been updated. The density in the last puzzle was being cut off at the wrong spot along one of the dimensions, and this time around, the density should contain one whole copy of the protein (it's in there somewhere!). Keep in mind that there are some pieces of density from other copies of the protein, and you'll have to figure out which parts actually belong. We're working on some exciting new tools that will allow you to edit which parts of the density you actually see, so stay tuned to the Developer Preview!

Top groups

  1. Avatar for Contenders
    1. Contenders
    100 pts. 3,171
  2. Avatar for Anthropic Dreams 2. Anthropic Dreams 82 pts. 3,047
  3. Avatar for Go Science 3. Go Science 66 pts. 2,766
  4. Avatar for L'Alliance Francophone 4. L'Alliance Francophone 53 pts. 2,738
  5. Avatar for HMT heritage 5. HMT heritage 42 pts. 2,703
  6. Avatar for foldeRNA 6. foldeRNA 33 pts. 2,693
  7. Avatar for Beta Folders 7. Beta Folders 26 pts. 2,691
  8. Avatar for Gargleblasters 8. Gargleblasters 20 pts. 2,654
  9. Avatar for Void Crushers 9. Void Crushers 15 pts. 2,638
  10. Avatar for Deleted group 10. Deleted group pts. 2,383
  1. Avatar for Petrifolder 141. Petrifolder Lv 1 6 pts. 1,163
  2. Avatar for andrewxc 142. andrewxc Lv 1 5 pts. 1,158
  3. Avatar for NAHA3 143. NAHA3 Lv 1 5 pts. 1,130
  4. Avatar for jermainiac 144. jermainiac Lv 1 5 pts. 1,108
  5. Avatar for mirjamvandelft 145. mirjamvandelft Lv 1 5 pts. 1,099
  6. Avatar for ErichVonSterich 146. ErichVonSterich Lv 1 5 pts. 1,091
  7. Avatar for smileyfuntime 147. smileyfuntime Lv 1 5 pts. 1,072
  8. Avatar for Merf 148. Merf Lv 1 5 pts. 1,056
  9. Avatar for Brewster 149. Brewster Lv 1 5 pts. 1,051
  10. Avatar for jogie62 150. jogie62 Lv 1 4 pts. 1,051

Comments

Bletchley Park Lv 1

Would you please tell us which 'TMPL' from the threading window is which quark or zhang model from 'reset puzzle' ? And also which one is thus missing from the cycling of the 'reset puzzle'. It would save us a lot of time in figuring that out.

Susume Lv 1

Do we know whether the proteins in the ED are arranged as a tetramer, or whether all the monomers face the same way? Do we know whether the ED includes the long leading helix (segments 1-27) which is missing from the published native?

I ask not just in reference to this puzzle, but in general if a protein is a polymer, will the ED have the proteins arranged into that polymer?