683: CASP10 Target T0709 Repost

Closed since about 13 years ago

Summary

• Created: March 02, 2013
• Expires: March 12, 2013 at 23:00 UTC
• Max points: 100

Description

We are reposting this 33 residue CASP10 target to try out the new
Disulfide Count Score Filter. We are giving you the top-predicted
templates from 3 different alignment programs and you can see that
they are all very similar. More details about this CASP target are in
the puzzle comments.

Top groups

• 11. HMT heritage 7 pts. 8,760
• 12. Deleted group pts. 8,758
• 13. Deleted group pts. 8,748
• 14. SETI.Germany 3 pts. 8,690
• 15. Richard Dawkins Foundation 2 pts. 8,667
• 16. Natural Abilities 1 pt. 8,661
• 17. Team Schleswig-Holstein 1 pt. 8,583
• 18. Davidson College Wildcats 1 pt. 8,567
• 19. Piratenpartei Deutschland 1 pt. 8,374
• 20. Brony@Home 1 pt. 8,281

Top soloists

• 1. gmn 100 pts. 8,864
• 2. frood66 99 pts. 8,852
• 3. hansvandenhof 97 pts. 8,850
• 4. phi16 95 pts. 8,848
• 5. karstenw 93 pts. 8,841
• 6. gitwut 92 pts. 8,838
• 7. brow42 90 pts. 8,828
• 8. jermainiac 88 pts. 8,826
• 9. bertro 87 pts. 8,821
• 10. Susume 85 pts. 8,819

Comments

[tjbertram]

Here is the CASP link for this target (showing the amino acid sequence):
http://predictioncenter.org/casp10/target.cgi?id=113
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Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

You can see that these secondary structure predictions imply that this protein is mostly loop!
__________________

Link to template PDBs:

http://www.pdb.org/pdb/explore/explore.do?structureId=1lu0
http://www.pdb.org/pdb/explore/explore.do?structureId=1w7z
http://www.pdb.org/pdb/explore/explore.do?structureId=1h9h