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683: CASP10 Target T0709 Repost

Closed since about 13 years ago

Intermediate Overall Prediction

Summary

Created
March 02, 2013
Expires
Max points
100
Description

We are reposting this 33 residue CASP10 target to try out the new
Disulfide Count Score Filter. We are giving you the top-predicted
templates from 3 different alignment programs and you can see that
they are all very similar. More details about this CASP target are in
the puzzle comments.

Top groups

  1. Avatar for Skeptics Guide to the Universe 21. Skeptics Guide to the Universe 1 pt. 8,115
  2. Avatar for Nerdfighters 22. Nerdfighters 1 pt. 8,080
  3. Avatar for DSN @ Home 23. DSN @ Home 1 pt. 7,996
  4. Avatar for Crunching Family 24. Crunching Family 1 pt. 7,842
  5. Avatar for DNA Masters 25. DNA Masters 1 pt. 7,678
  1. Avatar for Thooliv 211. Thooliv Lv 1 1 pt. 8,166
  2. Avatar for Helavor 212. Helavor Lv 1 1 pt. 8,163
  3. Avatar for GRandall64 213. GRandall64 Lv 1 1 pt. 8,142
  4. Avatar for anna_k1729 214. anna_k1729 Lv 1 1 pt. 8,142
  5. Avatar for JeNNeR 215. JeNNeR Lv 1 1 pt. 8,124
  6. Avatar for galactobourico 216. galactobourico Lv 1 1 pt. 8,118
  7. Avatar for Deleted player 217. Deleted player 1 pt. 8,115
  8. Avatar for BigMusel 218. BigMusel Lv 1 1 pt. 8,111
  9. Avatar for Thrianya 219. Thrianya Lv 1 1 pt. 8,111
  10. Avatar for NAHA3 220. NAHA3 Lv 1 1 pt. 8,102

Comments

tjbertram Lv 1

Here is the CASP link for this target (showing the amino acid sequence):
http://predictioncenter.org/casp10/target.cgi?id=113
__________________

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

You can see that these secondary structure predictions imply that this protein is mostly loop!
__________________

Link to template PDBs:

http://www.pdb.org/pdb/explore/explore.do?structureId=1lu0
http://www.pdb.org/pdb/explore/explore.do?structureId=1w7z
http://www.pdb.org/pdb/explore/explore.do?structureId=1h9h