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683: CASP10 Target T0709 Repost

Closed since about 13 years ago

Intermediate Overall Prediction

Summary

Created
March 02, 2013
Expires
Max points
100
Description

We are reposting this 33 residue CASP10 target to try out the new
Disulfide Count Score Filter. We are giving you the top-predicted
templates from 3 different alignment programs and you can see that
they are all very similar. More details about this CASP target are in
the puzzle comments.

Top groups

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    1. Anthropic Dreams
    100 pts. 8,865
  2. Avatar for Gargleblasters 2. Gargleblasters 81 pts. 8,852
  3. Avatar for Contenders 3. Contenders 65 pts. 8,838
  4. Avatar for Beta Folders 4. Beta Folders 52 pts. 8,821
  5. Avatar for Russian team 5. Russian team 41 pts. 8,819
  6. Avatar for Void Crushers 6. Void Crushers 32 pts. 8,804
  7. Avatar for foldeRNA 7. foldeRNA 24 pts. 8,784
  8. Avatar for FoldIt@Netherlands 8. FoldIt@Netherlands 18 pts. 8,781
  9. Avatar for L'Alliance Francophone 9. L'Alliance Francophone 14 pts. 8,768
  10. Avatar for Go Science 10. Go Science 10 pts. 8,766
  1. Avatar for lange 201. lange Lv 1 1 pt. 8,196
  2. Avatar for blend 202. blend Lv 1 1 pt. 8,195
  3. Avatar for harvardman 203. harvardman Lv 1 1 pt. 8,194
  4. Avatar for barbaranne 204. barbaranne Lv 1 1 pt. 8,191
  5. Avatar for crawlee34225 205. crawlee34225 Lv 1 1 pt. 8,187
  6. Avatar for Pegasus1207 206. Pegasus1207 Lv 1 1 pt. 8,182
  7. Avatar for tjommis91 207. tjommis91 Lv 1 1 pt. 8,181
  8. Avatar for sbea3 208. sbea3 Lv 1 1 pt. 8,172
  9. Avatar for AleXusher 209. AleXusher Lv 1 1 pt. 8,169
  10. Avatar for cgbriggs 210. cgbriggs Lv 1 1 pt. 8,168

Comments

tjbertram Lv 1

Here is the CASP link for this target (showing the amino acid sequence):
http://predictioncenter.org/casp10/target.cgi?id=113
__________________

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

You can see that these secondary structure predictions imply that this protein is mostly loop!
__________________

Link to template PDBs:

http://www.pdb.org/pdb/explore/explore.do?structureId=1lu0
http://www.pdb.org/pdb/explore/explore.do?structureId=1w7z
http://www.pdb.org/pdb/explore/explore.do?structureId=1h9h