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782: De-novo Freestyle 30: Hand-folding Round

Closed since over 12 years ago

Intermediate Overall Prediction Hand-Folding

Summary

Created
September 20, 2013
Expires
Max points
100
Description

We are giving you another currently unsolved protein as an extended chain. This round only GUI scripts are allowed and sharing has been disabled. After this puzzle expires, the puzzle will be re-posted and LUA scripts and sharing will be allowed. You'll be able to load in your solutions from this puzzle and use scripting and sharing.

Top groups

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    1. Contenders
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  7. Avatar for Beta Folders 7. Beta Folders 27 pts. 9,930
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  9. Avatar for Russian team 9. Russian team 16 pts. 9,829
  10. Avatar for L'Alliance Francophone 10. L'Alliance Francophone 12 pts. 9,783
  1. Avatar for 4uGakTomas 211. 4uGakTomas Lv 1 1 pt. 7,859
  2. Avatar for Thrianya 212. Thrianya Lv 1 1 pt. 7,824
  3. Avatar for sblond1 213. sblond1 Lv 1 1 pt. 7,823
  4. Avatar for DaintyClaws 214. DaintyClaws Lv 1 1 pt. 7,762
  5. Avatar for GreekCivilization 215. GreekCivilization Lv 1 1 pt. 7,724
  6. Avatar for aspadistra 216. aspadistra Lv 1 1 pt. 7,668
  7. Avatar for NickySea 217. NickySea Lv 1 1 pt. 7,607
  8. Avatar for Bongojim 218. Bongojim Lv 1 1 pt. 7,397
  9. Avatar for Shadee 219. Shadee Lv 1 1 pt. 7,189
  10. Avatar for Leyu 220. Leyu Lv 1 1 pt. 7,072

Comments

bkoep Staff Lv 1

We're still waiting on the secondary structure predictions for this protein. Check back later for updates!

bkoep Staff Lv 1

SPILPKAENVDSICIDFTNSIQKIYDDSESIQKILSEIATGKRTEKQSIQDYPSAEEYGTINIENNGGMTTMFYYEENGKYYIECPYKGIYEIENNFEDMI

bkoep Staff Lv 1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Isoleucines at residues 13 and 25 are highly predicted to be part of a sheet. However, the Isoleucines at residues 31 and 38 are predicted to be part of a helix!