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920: CASP11 Target Ts785: Sparse Data Contacts

Closed since over 11 years ago

Intermediate

Summary

Created
June 18, 2014
Expires
Max points
100
Description

For this target, the CASP11 organizers have provided "sparse" experimental data about possible contacts in the protein. Contacts are factored directly into your score in this puzzle, and contribute to the "Backbone" subscore. The starting structure is an extended chain, and secondary structure predictions can be found below in the puzzle comments.

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Comments

bkoep Staff Lv 1

Here is the sequence logo predicted by the SAM server:

NOTE: Numbering is off as the first 2 residues were trimmed by CASP
H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.