Placeholder image of a protein
Icon representing a puzzle

920: CASP11 Target Ts785: Sparse Data Contacts

Closed since over 11 years ago

Intermediate

Summary

Created
June 18, 2014
Expires
Max points
100
Description

For this target, the CASP11 organizers have provided "sparse" experimental data about possible contacts in the protein. Contacts are factored directly into your score in this puzzle, and contribute to the "Backbone" subscore. The starting structure is an extended chain, and secondary structure predictions can be found below in the puzzle comments.

Top groups

  1. Avatar for Anthropic Dreams
    1. Anthropic Dreams
    100 pts. 8,802
  2. Avatar for Void Crushers 2. Void Crushers 60 pts. 8,667
  3. Avatar for Go Science 3. Go Science 33 pts. 8,571
  4. Avatar for FoldIt@Netherlands 4. FoldIt@Netherlands 17 pts. 8,465
  5. Avatar for Beta Folders 5. Beta Folders 8 pts. 8,369
  6. Avatar for Contenders 6. Contenders 4 pts. 8,368
  7. Avatar for Gargleblasters 7. Gargleblasters 2 pts. 8,257
  8. Avatar for SETI.Germany 8. SETI.Germany 1 pt. 7,555
  9. Avatar for Natural Abilities 9. Natural Abilities 1 pt. 7,408
  10. Avatar for L'Alliance Francophone 10. L'Alliance Francophone 1 pt. 3,618
  1. Avatar for pauldunn 11. pauldunn Lv 1 44 pts. 8,245
  2. Avatar for johnmitch 12. johnmitch Lv 1 41 pts. 8,222
  3. Avatar for pvc78 13. pvc78 Lv 1 37 pts. 8,203
  4. Avatar for hpaege 14. hpaege Lv 1 34 pts. 8,201
  5. Avatar for navn 15. navn Lv 1 31 pts. 8,022
  6. Avatar for Antibrad 16. Antibrad Lv 1 28 pts. 7,973
  7. Avatar for Madde 17. Madde Lv 1 25 pts. 7,927
  8. Avatar for BackupElk 18. BackupElk Lv 1 23 pts. 7,880
  9. Avatar for cobaltteal 19. cobaltteal Lv 1 21 pts. 7,809
  10. Avatar for NycteaSandiaca 20. NycteaSandiaca Lv 1 19 pts. 7,736

Comments

bkoep Staff Lv 1

Here is the sequence logo predicted by the SAM server:

NOTE: Numbering is off as the first 2 residues were trimmed by CASP
H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.