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920b: CASP11 Target Ts785: Sparse Data Contacts

Closed since over 11 years ago

Intermediate Overall Prediction CASP11 Predicted Contacts

Summary

Created
June 19, 2014
Expires
Max points
100
Description

NOTE: THIS PUZZLE IS CLOSING EARLIER THAN ORIGINALLY SCHEDULED! This puzzle is a repost of Puzzle 920 which included an erroneous contact map. The set of predicted contacts has been improved for this puzzle, and the Contact Filter has been activated. Players may load in solutions from Puzzle 920.

For this target, the CASP11 organizers have provided "sparse" experimental data about possible contacts in the protein. Contacts are scored with the Contact Map filter in this puzzle, and there is an upper limit of 950 possible points from the filter. The starting structure is an extended chain, and secondary structure predictions can be found below in the puzzle comments.

Top groups

  1. Avatar for Deleted group 11. Deleted group pts. 8,614
  2. Avatar for HMT heritage 12. HMT heritage 5 pts. 8,493
  3. Avatar for Repro-men 13. Repro-men 4 pts. 8,422
  4. Avatar for SETI.Germany 14. SETI.Germany 3 pts. 8,407
  5. Avatar for Piratenpartei Deutschland 15. Piratenpartei Deutschland 2 pts. 8,200
  6. Avatar for Italiani Al Lavoro 16. Italiani Al Lavoro 1 pt. 8,190
  7. Avatar for Mojo Risin' 17. Mojo Risin' 1 pt. 8,056
  8. Avatar for CHNO Junkies 18. CHNO Junkies 1 pt. 7,814
  9. Avatar for Natural Abilities 19. Natural Abilities 1 pt. 7,680
  10. Avatar for White-Browed Shrike-Babblers 20. White-Browed Shrike-Babblers 1 pt. 6,469
  1. Avatar for Mlevanic 161. Mlevanic Lv 1 1 pt. 0
  2. Avatar for jflat06 162. jflat06 Lv 1 1 pt. 0
  3. Avatar for Ch Garnier 163. Ch Garnier Lv 1 1 pt. 0
  4. Avatar for Darkknight900 164. Darkknight900 Lv 1 1 pt. 0
  5. Avatar for StackOverflow 165. StackOverflow Lv 1 1 pt. 0
  6. Avatar for Deleted player 166. Deleted player pts. 0
  7. Avatar for fishercat 167. fishercat Lv 1 1 pt. 0
  8. Avatar for momadoc 168. momadoc Lv 1 1 pt. 0
  9. Avatar for tomespen 169. tomespen Lv 1 1 pt. 0
  10. Avatar for gdnskye 170. gdnskye Lv 1 1 pt. 0

Comments

bkoep Staff Lv 1

Here is the sequence logo predicted by the SAM server:

NOTE: Numbering is off as the first 2 residues were trimmed by CASP
H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.