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920b: CASP11 Target Ts785: Sparse Data Contacts

Closed since over 11 years ago

Intermediate Overall Prediction CASP11 Predicted Contacts

Summary

Created
June 19, 2014
Expires
Max points
100
Description

NOTE: THIS PUZZLE IS CLOSING EARLIER THAN ORIGINALLY SCHEDULED! This puzzle is a repost of Puzzle 920 which included an erroneous contact map. The set of predicted contacts has been improved for this puzzle, and the Contact Filter has been activated. Players may load in solutions from Puzzle 920.

For this target, the CASP11 organizers have provided "sparse" experimental data about possible contacts in the protein. Contacts are scored with the Contact Map filter in this puzzle, and there is an upper limit of 950 possible points from the filter. The starting structure is an extended chain, and secondary structure predictions can be found below in the puzzle comments.

Top groups

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  3. Avatar for Repro-men 13. Repro-men 4 pts. 8,422
  4. Avatar for SETI.Germany 14. SETI.Germany 3 pts. 8,407
  5. Avatar for Piratenpartei Deutschland 15. Piratenpartei Deutschland 2 pts. 8,200
  6. Avatar for Italiani Al Lavoro 16. Italiani Al Lavoro 1 pt. 8,190
  7. Avatar for Mojo Risin' 17. Mojo Risin' 1 pt. 8,056
  8. Avatar for CHNO Junkies 18. CHNO Junkies 1 pt. 7,814
  9. Avatar for Natural Abilities 19. Natural Abilities 1 pt. 7,680
  10. Avatar for White-Browed Shrike-Babblers 20. White-Browed Shrike-Babblers 1 pt. 6,469
  1. Avatar for Antibrad 21. Antibrad Lv 1 56 pts. 9,039
  2. Avatar for Timo van der Laan 22. Timo van der Laan Lv 1 54 pts. 9,023
  3. Avatar for Galaxie 23. Galaxie Lv 1 53 pts. 9,011
  4. Avatar for phi16 24. phi16 Lv 1 51 pts. 9,004
  5. Avatar for smilingone 25. smilingone Lv 1 50 pts. 8,970
  6. Avatar for Vredeman 26. Vredeman Lv 1 48 pts. 8,950
  7. Avatar for grogar7 27. grogar7 Lv 1 47 pts. 8,945
  8. Avatar for Deleted player 28. Deleted player pts. 8,942
  9. Avatar for Grom 29. Grom Lv 1 44 pts. 8,933
  10. Avatar for dcrwheeler 30. dcrwheeler Lv 1 42 pts. 8,896

Comments

bkoep Staff Lv 1

Here is the sequence logo predicted by the SAM server:

NOTE: Numbering is off as the first 2 residues were trimmed by CASP
H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.