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920b: CASP11 Target Ts785: Sparse Data Contacts

Closed since over 11 years ago

Intermediate Overall Prediction CASP11 Predicted Contacts

Summary

Created
June 19, 2014
Expires
Max points
100
Description

NOTE: THIS PUZZLE IS CLOSING EARLIER THAN ORIGINALLY SCHEDULED! This puzzle is a repost of Puzzle 920 which included an erroneous contact map. The set of predicted contacts has been improved for this puzzle, and the Contact Filter has been activated. Players may load in solutions from Puzzle 920.

For this target, the CASP11 organizers have provided "sparse" experimental data about possible contacts in the protein. Contacts are scored with the Contact Map filter in this puzzle, and there is an upper limit of 950 possible points from the filter. The starting structure is an extended chain, and secondary structure predictions can be found below in the puzzle comments.

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  1. Avatar for greepski 181. greepski Lv 1 1 pt. 0
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Comments

bkoep Staff Lv 1

Here is the sequence logo predicted by the SAM server:

NOTE: Numbering is off as the first 2 residues were trimmed by CASP
H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.