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926: CASP11 T0818: WeFold Round

Closed since almost 12 years ago

Intermediate Overall Prediction CASP11

Summary

Created
June 26, 2014
Expires
Max points
100
Description

For this 143 residue CASP11 Target, T0818, we are giving you 4 different server predictions selected by our WeFold collaborators. Resetting the puzzle will cycle through each model and they are available in the Alignment Tool so you can use partial threading between them. Secondary structure predictions are in the puzzle comments.

Top groups

  1. Avatar for SETI.Germany 21. SETI.Germany 1 pt. 8,647
  2. Avatar for Deleted group 22. Deleted group pts. 8,646
  1. Avatar for Lindata 101. Lindata Lv 1 4 pts. 9,160
  2. Avatar for greepski 102. greepski Lv 1 4 pts. 9,158
  3. Avatar for Bithalbierer 103. Bithalbierer Lv 1 4 pts. 9,156
  4. Avatar for JasperD 104. JasperD Lv 1 4 pts. 9,146
  5. Avatar for Jajaboman 105. Jajaboman Lv 1 3 pts. 9,142
  6. Avatar for marie.p 106. marie.p Lv 1 3 pts. 9,115
  7. Avatar for joaniegirl 107. joaniegirl Lv 1 3 pts. 9,112
  8. Avatar for andrewtmaxwell 108. andrewtmaxwell Lv 1 3 pts. 9,100
  9. Avatar for FreeFolder 109. FreeFolder Lv 1 3 pts. 9,091
  10. Avatar for aspadistra 110. aspadistra Lv 1 3 pts. 9,087

Comments

beta_helix Staff Lv 1

NOTE: Numbering is off as the first 23 residues were trimmed, so this secondary structure prediction might help:
http://rosettaserver.bakerlab.org/results.jsp?id=48924&p=1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

Note that these secondary structure predictions are not necessarily present in the models that have been provided in the puzzle.