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926: CASP11 T0818: WeFold Round

Closed since almost 12 years ago

Intermediate Overall Prediction CASP11

Summary

Created
June 26, 2014
Expires
Max points
100
Description

For this 143 residue CASP11 Target, T0818, we are giving you 4 different server predictions selected by our WeFold collaborators. Resetting the puzzle will cycle through each model and they are available in the Alignment Tool so you can use partial threading between them. Secondary structure predictions are in the puzzle comments.

Top groups

  1. Avatar for SETI.Germany 21. SETI.Germany 1 pt. 8,647
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  1. Avatar for StackOverflow 111. StackOverflow Lv 1 3 pts. 9,086
  2. Avatar for Arthur Dent 112. Arthur Dent Lv 1 3 pts. 9,081
  3. Avatar for brgreening 113. brgreening Lv 1 2 pts. 9,077
  4. Avatar for JeNNeR 114. JeNNeR Lv 1 2 pts. 9,067
  5. Avatar for Arne Heessels 115. Arne Heessels Lv 1 2 pts. 9,048
  6. Avatar for harvardman 116. harvardman Lv 1 2 pts. 9,041
  7. Avatar for emdee314 117. emdee314 Lv 1 2 pts. 9,035
  8. Avatar for Ashrai 118. Ashrai Lv 1 2 pts. 9,033
  9. Avatar for lange 119. lange Lv 1 2 pts. 9,011
  10. Avatar for Bletchley Park 120. Bletchley Park Lv 1 2 pts. 8,994

Comments

beta_helix Staff Lv 1

NOTE: Numbering is off as the first 23 residues were trimmed, so this secondary structure prediction might help:
http://rosettaserver.bakerlab.org/results.jsp?id=48924&p=1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

Note that these secondary structure predictions are not necessarily present in the models that have been provided in the puzzle.