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926: CASP11 T0818: WeFold Round

Closed since almost 12 years ago

Intermediate Overall Prediction CASP11

Summary

Created
June 26, 2014
Expires
Max points
100
Description

For this 143 residue CASP11 Target, T0818, we are giving you 4 different server predictions selected by our WeFold collaborators. Resetting the puzzle will cycle through each model and they are available in the Alignment Tool so you can use partial threading between them. Secondary structure predictions are in the puzzle comments.

Top groups

  1. Avatar for SETI.Germany 21. SETI.Germany 1 pt. 8,647
  2. Avatar for Deleted group 22. Deleted group pts. 8,646
  1. Avatar for Javantea 141. Javantea Lv 1 1 pt. 8,824
  2. Avatar for Deleted player 142. Deleted player pts. 8,821
  3. Avatar for cnhrcolemam 143. cnhrcolemam Lv 1 1 pt. 8,810
  4. Avatar for ppp6 144. ppp6 Lv 1 1 pt. 8,797
  5. Avatar for Tac1 145. Tac1 Lv 1 1 pt. 8,795
  6. Avatar for SHK5P 146. SHK5P Lv 1 1 pt. 8,788
  7. Avatar for noxrenge 147. noxrenge Lv 1 1 pt. 8,785
  8. Avatar for mirjamvandelft 148. mirjamvandelft Lv 1 1 pt. 8,764
  9. Avatar for Pibeagles 149. Pibeagles Lv 1 1 pt. 8,763
  10. Avatar for turbolag 150. turbolag Lv 1 1 pt. 8,760

Comments

beta_helix Staff Lv 1

NOTE: Numbering is off as the first 23 residues were trimmed, so this secondary structure prediction might help:
http://rosettaserver.bakerlab.org/results.jsp?id=48924&p=1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

Note that these secondary structure predictions are not necessarily present in the models that have been provided in the puzzle.