Placeholder image of a protein
Icon representing a puzzle

926: CASP11 T0818: WeFold Round

Closed since almost 12 years ago

Intermediate Overall Prediction CASP11

Summary

Created
June 26, 2014
Expires
Max points
100
Description

For this 143 residue CASP11 Target, T0818, we are giving you 4 different server predictions selected by our WeFold collaborators. Resetting the puzzle will cycle through each model and they are available in the Alignment Tool so you can use partial threading between them. Secondary structure predictions are in the puzzle comments.

Top groups

  1. Avatar for SETI.Germany 21. SETI.Germany 1 pt. 8,647
  2. Avatar for Deleted group 22. Deleted group pts. 8,646
  1. Avatar for martinf 151. martinf Lv 1 1 pt. 8,757
  2. Avatar for RHirner 152. RHirner Lv 1 1 pt. 8,722
  3. Avatar for Lumir 153. Lumir Lv 1 1 pt. 8,717
  4. Avatar for galactobourico 154. galactobourico Lv 1 1 pt. 8,716
  5. Avatar for clee1 155. clee1 Lv 1 1 pt. 8,712
  6. Avatar for bmf0415 156. bmf0415 Lv 1 1 pt. 8,704
  7. Avatar for Jumpy2520 157. Jumpy2520 Lv 1 1 pt. 8,684
  8. Avatar for BCAA 158. BCAA Lv 1 1 pt. 8,679
  9. Avatar for lilovip 159. lilovip Lv 1 1 pt. 8,649
  10. Avatar for frostschutz 160. frostschutz Lv 1 1 pt. 8,647

Comments

beta_helix Staff Lv 1

NOTE: Numbering is off as the first 23 residues were trimmed, so this secondary structure prediction might help:
http://rosettaserver.bakerlab.org/results.jsp?id=48924&p=1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

Note that these secondary structure predictions are not necessarily present in the models that have been provided in the puzzle.