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926: CASP11 T0818: WeFold Round

Closed since almost 12 years ago

Intermediate Overall Prediction CASP11

Summary

Created
June 26, 2014
Expires
Max points
100
Description

For this 143 residue CASP11 Target, T0818, we are giving you 4 different server predictions selected by our WeFold collaborators. Resetting the puzzle will cycle through each model and they are available in the Alignment Tool so you can use partial threading between them. Secondary structure predictions are in the puzzle comments.

Top groups

  1. Avatar for SETI.Germany 21. SETI.Germany 1 pt. 8,647
  2. Avatar for Deleted group 22. Deleted group pts. 8,646
  1. Avatar for Anfinsen_slept_here 171. Anfinsen_slept_here Lv 1 1 pt. 8,440
  2. Avatar for fedtchenko 172. fedtchenko Lv 1 1 pt. 8,397
  3. Avatar for crawlee34225 173. crawlee34225 Lv 1 1 pt. 8,395
  4. Avatar for petetrig 174. petetrig Lv 1 1 pt. 8,376
  5. Avatar for k4t0n1 175. k4t0n1 Lv 1 1 pt. 8,372
  6. Avatar for chris_caywood 176. chris_caywood Lv 1 1 pt. 8,325
  7. Avatar for nmos1056 177. nmos1056 Lv 1 1 pt. 8,248
  8. Avatar for dettingen 178. dettingen Lv 1 1 pt. 8,238
  9. Avatar for neary 179. neary Lv 1 1 pt. 8,222
  10. Avatar for maastolman 180. maastolman Lv 1 1 pt. 8,060

Comments

beta_helix Staff Lv 1

NOTE: Numbering is off as the first 23 residues were trimmed, so this secondary structure prediction might help:
http://rosettaserver.bakerlab.org/results.jsp?id=48924&p=1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

Note that these secondary structure predictions are not necessarily present in the models that have been provided in the puzzle.