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926: CASP11 T0818: WeFold Round

Closed since almost 12 years ago

Intermediate Overall Prediction CASP11

Summary

Created
June 26, 2014
Expires
Max points
100
Description

For this 143 residue CASP11 Target, T0818, we are giving you 4 different server predictions selected by our WeFold collaborators. Resetting the puzzle will cycle through each model and they are available in the Alignment Tool so you can use partial threading between them. Secondary structure predictions are in the puzzle comments.

Top groups

  1. Avatar for SETI.Germany 21. SETI.Germany 1 pt. 8,647
  2. Avatar for Deleted group 22. Deleted group pts. 8,646
  1. Avatar for ivalnic 181. ivalnic Lv 1 1 pt. 8,023
  2. Avatar for cassandraberry81897 182. cassandraberry81897 Lv 1 1 pt. 7,973
  3. Avatar for Pixiemama 183. Pixiemama Lv 1 1 pt. 7,853
  4. Avatar for Kevonni 184. Kevonni Lv 1 1 pt. 7,685
  5. Avatar for persephone977 185. persephone977 Lv 1 1 pt. 7,683
  6. Avatar for inkycatz 186. inkycatz Lv 1 1 pt. 7,671
  7. Avatar for Mlevanic 187. Mlevanic Lv 1 1 pt. 7,654
  8. Avatar for yucka 188. yucka Lv 1 1 pt. 7,401
  9. Avatar for Deleted player 189. Deleted player pts. 7,156
  10. Avatar for davidja@vcu.edu 190. davidja@vcu.edu Lv 1 1 pt. 1,572

Comments

beta_helix Staff Lv 1

NOTE: Numbering is off as the first 23 residues were trimmed, so this secondary structure prediction might help:
http://rosettaserver.bakerlab.org/results.jsp?id=48924&p=1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

Note that these secondary structure predictions are not necessarily present in the models that have been provided in the puzzle.