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926: CASP11 T0818: WeFold Round

Closed since over 11 years ago

Intermediate Overall Prediction CASP11

Summary

Created
June 26, 2014
Expires
Max points
100
Description

For this 143 residue CASP11 Target, T0818, we are giving you 4 different server predictions selected by our WeFold collaborators. Resetting the puzzle will cycle through each model and they are available in the Alignment Tool so you can use partial threading between them. Secondary structure predictions are in the puzzle comments.

Top groups

  1. Avatar for SETI.Germany 21. SETI.Germany 1 pt. 8,647
  2. Avatar for Deleted group 22. Deleted group pts. 8,646
  1. Avatar for Susume 11. Susume Lv 1 78 pts. 9,866
  2. Avatar for wisky 12. wisky Lv 1 76 pts. 9,861
  3. Avatar for BitSpawn 13. BitSpawn Lv 1 74 pts. 9,853
  4. Avatar for retiredmichael 14. retiredmichael Lv 1 73 pts. 9,847
  5. Avatar for KarenCH 15. KarenCH Lv 1 71 pts. 9,832
  6. Avatar for gloverd 16. gloverd Lv 1 69 pts. 9,823
  7. Avatar for pauldunn 17. pauldunn Lv 1 67 pts. 9,817
  8. Avatar for LociOiling 18. LociOiling Lv 1 65 pts. 9,817
  9. Avatar for Tony Origami 19. Tony Origami Lv 1 64 pts. 9,806
  10. Avatar for bob1928 20. bob1928 Lv 1 62 pts. 9,778

Comments

beta_helix Staff Lv 1

NOTE: Numbering is off as the first 23 residues were trimmed, so this secondary structure prediction might help:
http://rosettaserver.bakerlab.org/results.jsp?id=48924&p=1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

Note that these secondary structure predictions are not necessarily present in the models that have been provided in the puzzle.