Placeholder image of a protein
Icon representing a puzzle

926: CASP11 T0818: WeFold Round

Closed since almost 12 years ago

Intermediate Overall Prediction CASP11

Summary

Created
June 26, 2014
Expires
Max points
100
Description

For this 143 residue CASP11 Target, T0818, we are giving you 4 different server predictions selected by our WeFold collaborators. Resetting the puzzle will cycle through each model and they are available in the Alignment Tool so you can use partial threading between them. Secondary structure predictions are in the puzzle comments.

Top groups

  1. Avatar for SETI.Germany 21. SETI.Germany 1 pt. 8,647
  2. Avatar for Deleted group 22. Deleted group pts. 8,646
  1. Avatar for ncm25_OLD 51. ncm25_OLD Lv 1 25 pts. 9,507
  2. Avatar for Grom 52. Grom Lv 1 24 pts. 9,478
  3. Avatar for Deleted player 53. Deleted player pts. 9,478
  4. Avatar for joremen 54. joremen Lv 1 23 pts. 9,473
  5. Avatar for weitzen 55. weitzen Lv 1 22 pts. 9,459
  6. Avatar for vuvuvu 56. vuvuvu Lv 1 21 pts. 9,445
  7. Avatar for NickyCGS 57. NickyCGS Lv 1 21 pts. 9,442
  8. Avatar for alcor29 58. alcor29 Lv 1 20 pts. 9,442
  9. Avatar for crpainter 59. crpainter Lv 1 19 pts. 9,440
  10. Avatar for SKSbell 60. SKSbell Lv 1 19 pts. 9,438

Comments

beta_helix Staff Lv 1

NOTE: Numbering is off as the first 23 residues were trimmed, so this secondary structure prediction might help:
http://rosettaserver.bakerlab.org/results.jsp?id=48924&p=1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

Note that these secondary structure predictions are not necessarily present in the models that have been provided in the puzzle.