bkoep Staff Lv 1
Here is the sequence logo predicted by the SAM server:
H = helix
E = sheet
C = loop (or coil)
The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.
933: CASP11 Target Ts802: Sparse Data Contacts
Closed since almost 12 years ago
Intermediate IntermediateSummary
- Created
- July 06, 2014
- Expires
- Max points
- 100
NOTE: This puzzle was closed prematurely and has been reposted here.
For this target, the CASP11 organizers have provided "sparse" experimental data about possible contacts in the protein. Contacts are scored with the Contact Map filter in this puzzle, and there is an upper limit of 15900 possible points from the filter. The starting structure is an extended chain, and secondary structure predictions can be found below in the puzzle comments.
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Comments
retiredmichael Lv 1
something might be wrong, have +6900 points from filters
LociOiling Lv 1
Sparse but massive?
KarenCH Lv 1
(U) max possible is actually 15300, not 5300. 50 points per contact.
bkoep Staff Lv 1
Sorry about that. There was an error in the original puzzle description—the maximum number of points from contacts is 15900. You should receive 150 points for each satisfied contact.
wisky Lv 1
Perhaps some more fine tuning is needed :P
This change seems to give a little TOO much weight to the contacts, at a loss of good quality folds :) You'll see it when you get the results back!