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933: CASP11 Target Ts802: Sparse Data Contacts

Closed since over 11 years ago

Intermediate

Summary

Created
July 06, 2014
Expires
Max points
100
Description

NOTE: This puzzle was closed prematurely and has been reposted here.

For this target, the CASP11 organizers have provided "sparse" experimental data about possible contacts in the protein. Contacts are scored with the Contact Map filter in this puzzle, and there is an upper limit of 15900 possible points from the filter. The starting structure is an extended chain, and secondary structure predictions can be found below in the puzzle comments.

Top groups

  1. Avatar for test_group1 21. test_group1 1 pt. 0
  2. Avatar for Window Group 22. Window Group 1 pt. 0
  1. Avatar for Deleted player 131. Deleted player pts. 9,086
  2. Avatar for nmos1056 132. nmos1056 Lv 1 1 pt. 9,080
  3. Avatar for manu8170 133. manu8170 Lv 1 1 pt. 8,940
  4. Avatar for trentis1 134. trentis1 Lv 1 1 pt. 8,743
  5. Avatar for Altercomp 135. Altercomp Lv 1 1 pt. 8,692
  6. Avatar for fishercat 136. fishercat Lv 1 1 pt. 8,658
  7. Avatar for Arne Heessels 137. Arne Heessels Lv 1 1 pt. 8,635
  8. Avatar for lange 138. lange Lv 1 1 pt. 8,589
  9. Avatar for sjn 139. sjn Lv 1 1 pt. 8,459
  10. Avatar for MuckeMcFly 140. MuckeMcFly Lv 1 1 pt. 8,098

Comments

bkoep Staff Lv 1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

bkoep Staff Lv 1

Sorry about that. There was an error in the original puzzle description—the maximum number of points from contacts is 15900. You should receive 150 points for each satisfied contact.

wisky Lv 1

Perhaps some more fine tuning is needed :P

This change seems to give a little TOO much weight to the contacts, at a loss of good quality folds :) You'll see it when you get the results back!