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938: CASP11 T0838: WeFold Round

Closed since over 11 years ago

Intermediate Overall Prediction CASP11

Summary


Created
July 14, 2014
Expires
Max points
100
Description

For this 133 residue CASP11 Target, T0838, we are giving you 2 different server predictions selected by our WeFold collaborators. Resetting the puzzle will cycle between both aligned models and they are available in the Alignment Tool so you can use partial threading between them. Secondary structure predictions are in the puzzle comments.

Top groups


  1. Avatar for HMT heritage 11. HMT heritage 4 pts. 9,755
  2. Avatar for Deleted group 12. Deleted group pts. 9,750
  3. Avatar for FoldIt@Netherlands 13. FoldIt@Netherlands 2 pts. 9,725
  4. Avatar for Italiani Al Lavoro 14. Italiani Al Lavoro 1 pt. 9,709
  5. Avatar for SETI.Germany 15. SETI.Germany 1 pt. 9,502
  6. Avatar for Natural Abilities 16. Natural Abilities 1 pt. 9,468
  7. Avatar for Czech National Team 18. Czech National Team 1 pt. 9,169
  8. Avatar for Geekdo 19. Geekdo 1 pt. 8,974
  9. Avatar for Team Mexico 20. Team Mexico 1 pt. 8,011

  1. Avatar for vmapro 121. vmapro Lv 1 2 pts. 9,463
  2. Avatar for tscherulli 122. tscherulli Lv 1 2 pts. 9,462
  3. Avatar for fishercat 123. fishercat Lv 1 2 pts. 9,459
  4. Avatar for Deleted player 124. Deleted player pts. 9,453
  5. Avatar for Sydefecks 125. Sydefecks Lv 1 2 pts. 9,452
  6. Avatar for manu8170 126. manu8170 Lv 1 2 pts. 9,451
  7. Avatar for MaartenDesnouck 127. MaartenDesnouck Lv 1 2 pts. 9,449
  8. Avatar for Jaco van As 128. Jaco van As Lv 1 2 pts. 9,444
  9. Avatar for PrettyPony2001 129. PrettyPony2001 Lv 1 2 pts. 9,433
  10. Avatar for smholst 130. smholst Lv 1 2 pts. 9,428

Comments


beta_helix Staff Lv 1

NOTE: Numbering is off as the first 21 residues were trimmed, so this secondary structure prediction might help:
http://rosettaserver.bakerlab.org/results.jsp?id=49285&p=1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

Note that these secondary structure predictions are not necessarily present in the models that have been provided in the puzzle.