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938: CASP11 T0838: WeFold Round

Closed since over 11 years ago

Intermediate Overall Prediction CASP11

Summary

Created
July 14, 2014
Expires
Max points
100
Description

For this 133 residue CASP11 Target, T0838, we are giving you 2 different server predictions selected by our WeFold collaborators. Resetting the puzzle will cycle between both aligned models and they are available in the Alignment Tool so you can use partial threading between them. Secondary structure predictions are in the puzzle comments.

Top groups

  1. Avatar for HMT heritage 11. HMT heritage 4 pts. 9,755
  2. Avatar for Deleted group 12. Deleted group pts. 9,750
  3. Avatar for FoldIt@Netherlands 13. FoldIt@Netherlands 2 pts. 9,725
  4. Avatar for Italiani Al Lavoro 14. Italiani Al Lavoro 1 pt. 9,709
  5. Avatar for SETI.Germany 15. SETI.Germany 1 pt. 9,502
  6. Avatar for Natural Abilities 16. Natural Abilities 1 pt. 9,468
  7. Avatar for Team Schleswig-Holstein 17. Team Schleswig-Holstein 1 pt. 9,403
  8. Avatar for Czech National Team 18. Czech National Team 1 pt. 9,169
  9. Avatar for Geekdo 19. Geekdo 1 pt. 8,974
  10. Avatar for Team Mexico 20. Team Mexico 1 pt. 8,011
  1. Avatar for gloverd 21. gloverd Lv 1 62 pts. 9,861
  2. Avatar for greepski 22. greepski Lv 1 61 pts. 9,855
  3. Avatar for smilingone 23. smilingone Lv 1 59 pts. 9,845
  4. Avatar for Deleted player 24. Deleted player 58 pts. 9,841
  5. Avatar for NickyCGS 25. NickyCGS Lv 1 56 pts. 9,836
  6. Avatar for eboppterp 26. eboppterp Lv 1 55 pts. 9,834
  7. Avatar for spvincent 27. spvincent Lv 1 53 pts. 9,832
  8. Avatar for mimi 28. mimi Lv 1 52 pts. 9,831
  9. Avatar for gitwut 29. gitwut Lv 1 51 pts. 9,826
  10. Avatar for Tony Origami 30. Tony Origami Lv 1 49 pts. 9,821

Comments

beta_helix Staff Lv 1

NOTE: Numbering is off as the first 21 residues were trimmed, so this secondary structure prediction might help:
http://rosettaserver.bakerlab.org/results.jsp?id=49285&p=1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

Note that these secondary structure predictions are not necessarily present in the models that have been provided in the puzzle.