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938: CASP11 T0838: WeFold Round

Closed since over 11 years ago

Intermediate Overall Prediction CASP11

Summary

Created
July 14, 2014
Expires
Max points
100
Description

For this 133 residue CASP11 Target, T0838, we are giving you 2 different server predictions selected by our WeFold collaborators. Resetting the puzzle will cycle between both aligned models and they are available in the Alignment Tool so you can use partial threading between them. Secondary structure predictions are in the puzzle comments.

Top groups

  1. Avatar for HMT heritage 11. HMT heritage 4 pts. 9,755
  2. Avatar for Deleted group 12. Deleted group pts. 9,750
  3. Avatar for FoldIt@Netherlands 13. FoldIt@Netherlands 2 pts. 9,725
  4. Avatar for Italiani Al Lavoro 14. Italiani Al Lavoro 1 pt. 9,709
  5. Avatar for SETI.Germany 15. SETI.Germany 1 pt. 9,502
  6. Avatar for Natural Abilities 16. Natural Abilities 1 pt. 9,468
  7. Avatar for Team Schleswig-Holstein 17. Team Schleswig-Holstein 1 pt. 9,403
  8. Avatar for Czech National Team 18. Czech National Team 1 pt. 9,169
  9. Avatar for Geekdo 19. Geekdo 1 pt. 8,974
  10. Avatar for Team Mexico 20. Team Mexico 1 pt. 8,011
  1. Avatar for Antibrad 71. Antibrad Lv 1 15 pts. 9,686
  2. Avatar for telesphore4 72. telesphore4 Lv 1 14 pts. 9,685
  3. Avatar for reefyrob 73. reefyrob Lv 1 14 pts. 9,680
  4. Avatar for Steven Pletsch 74. Steven Pletsch Lv 1 14 pts. 9,675
  5. Avatar for drumpeter18yrs9yrs 75. drumpeter18yrs9yrs Lv 1 13 pts. 9,675
  6. Avatar for silverberg 76. silverberg Lv 1 13 pts. 9,674
  7. Avatar for alcor29 77. alcor29 Lv 1 12 pts. 9,670
  8. Avatar for uhuuhu 78. uhuuhu Lv 1 12 pts. 9,666
  9. Avatar for ncm25_OLD 79. ncm25_OLD Lv 1 11 pts. 9,663
  10. Avatar for pgiles 80. pgiles Lv 1 11 pts. 9,663

Comments

beta_helix Staff Lv 1

NOTE: Numbering is off as the first 21 residues were trimmed, so this secondary structure prediction might help:
http://rosettaserver.bakerlab.org/results.jsp?id=49285&p=1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

Note that these secondary structure predictions are not necessarily present in the models that have been provided in the puzzle.