Placeholder image of a protein
Icon representing a puzzle

938: CASP11 T0838: WeFold Round

Closed since over 11 years ago

Intermediate Overall Prediction CASP11

Summary

Created
July 14, 2014
Expires
Max points
100
Description

For this 133 residue CASP11 Target, T0838, we are giving you 2 different server predictions selected by our WeFold collaborators. Resetting the puzzle will cycle between both aligned models and they are available in the Alignment Tool so you can use partial threading between them. Secondary structure predictions are in the puzzle comments.

Top groups

  1. Avatar for Deleted group 21. Deleted group pts. 7,708
  2. Avatar for DSN @ Home 22. DSN @ Home 1 pt. 7,668
  1. Avatar for heyubob2 201. heyubob2 Lv 1 1 pt. 7,280
  2. Avatar for Sanya_Zelva 202. Sanya_Zelva Lv 1 1 pt. 7,279
  3. Avatar for slo 203. slo Lv 1 1 pt. 7,260
  4. Avatar for Bletchley Park 204. Bletchley Park Lv 1 1 pt. 6,865
  5. Avatar for lovelove 205. lovelove Lv 1 1 pt. 5,878
  6. Avatar for ipolk 206. ipolk Lv 1 1 pt. 5,692
  7. Avatar for tomtots 207. tomtots Lv 1 1 pt. 3,592
  8. Avatar for petr95 208. petr95 Lv 1 1 pt. 505
  9. Avatar for cassandraberry81897 209. cassandraberry81897 Lv 1 1 pt. 0
  10. Avatar for 67850ghostrider 210. 67850ghostrider Lv 1 1 pt. 0

Comments

beta_helix Staff Lv 1

NOTE: Numbering is off as the first 21 residues were trimmed, so this secondary structure prediction might help:
http://rosettaserver.bakerlab.org/results.jsp?id=49285&p=1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

Note that these secondary structure predictions are not necessarily present in the models that have been provided in the puzzle.