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938: CASP11 T0838: WeFold Round

Closed since over 11 years ago

Intermediate Overall Prediction CASP11

Summary

Created
July 14, 2014
Expires
Max points
100
Description

For this 133 residue CASP11 Target, T0838, we are giving you 2 different server predictions selected by our WeFold collaborators. Resetting the puzzle will cycle between both aligned models and they are available in the Alignment Tool so you can use partial threading between them. Secondary structure predictions are in the puzzle comments.

Top groups

  1. Avatar for Deleted group 21. Deleted group pts. 7,708
  2. Avatar for DSN @ Home 22. DSN @ Home 1 pt. 7,668
  1. Avatar for KarenCH 51. KarenCH Lv 1 28 pts. 9,749
  2. Avatar for brow42 52. brow42 Lv 1 27 pts. 9,742
  3. Avatar for SamuelJackson 53. SamuelJackson Lv 1 26 pts. 9,732
  4. Avatar for cobaltteal 54. cobaltteal Lv 1 25 pts. 9,732
  5. Avatar for Hiro Protagonist 55. Hiro Protagonist Lv 1 25 pts. 9,725
  6. Avatar for mbinfield 56. mbinfield Lv 1 24 pts. 9,725
  7. Avatar for goastano 57. goastano Lv 1 23 pts. 9,721
  8. Avatar for hpaege 58. hpaege Lv 1 22 pts. 9,717
  9. Avatar for Crossed Sticks 59. Crossed Sticks Lv 1 22 pts. 9,716
  10. Avatar for Bushman 60. Bushman Lv 1 21 pts. 9,709

Comments

beta_helix Staff Lv 1

NOTE: Numbering is off as the first 21 residues were trimmed, so this secondary structure prediction might help:
http://rosettaserver.bakerlab.org/results.jsp?id=49285&p=1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

Note that these secondary structure predictions are not necessarily present in the models that have been provided in the puzzle.