Placeholder image of a protein
Icon representing a puzzle

939: CASP11 Target Ts810: Sparse Data Contacts

Closed since over 11 years ago

Intermediate Overall Prediction CASP11 Predicted Contacts

Summary

Created
July 15, 2014
Expires
Max points
100
Description

For this target, the CASP11 organizers have provided "sparse" experimental data about possible contacts in the protein. Contacts are scored with the Contact Map filter in this puzzle, and there is an upper limit of 6350 possible points from the filter. The starting structure is an extended chain, and secondary structure predictions can be found below in the puzzle comments.

Top groups

  1. Avatar for Anthropic Dreams
    1. Anthropic Dreams
    100 pts. 14,621
  2. Avatar for Beta Folders 2. Beta Folders 77 pts. 14,411
  3. Avatar for Void Crushers 3. Void Crushers 58 pts. 14,210
  4. Avatar for Contenders 4. Contenders 43 pts. 14,020
  5. Avatar for Gargleblasters 5. Gargleblasters 31 pts. 13,927
  6. Avatar for Go Science 6. Go Science 22 pts. 13,914
  7. Avatar for Deleted group 7. Deleted group pts. 13,709
  8. Avatar for FoldIt@Netherlands 8. FoldIt@Netherlands 11 pts. 13,675
  9. Avatar for SETI.Germany 9. SETI.Germany 7 pts. 13,513
  10. Avatar for L'Alliance Francophone 10. L'Alliance Francophone 5 pts. 13,259
  1. Avatar for perrya 91. perrya Lv 1 2 pts. 11,969
  2. Avatar for martinf 92. martinf Lv 1 2 pts. 11,954
  3. Avatar for deLaCeiba 93. deLaCeiba Lv 1 2 pts. 11,885
  4. Avatar for sharondipity 94. sharondipity Lv 1 2 pts. 11,867
  5. Avatar for karost 95. karost Lv 1 2 pts. 11,852
  6. Avatar for MuckeMcFly 96. MuckeMcFly Lv 1 1 pt. 11,805
  7. Avatar for Altercomp 97. Altercomp Lv 1 1 pt. 11,657
  8. Avatar for hpmj999 98. hpmj999 Lv 1 1 pt. 11,611
  9. Avatar for StackOverflow 99. StackOverflow Lv 1 1 pt. 11,595
  10. Avatar for rinze 100. rinze Lv 1 1 pt. 11,560

Comments

bkoep Staff Lv 1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.