Placeholder image of a protein
Icon representing a puzzle

941: CASP11 T0842: WeFold Round

Closed since over 11 years ago

Intermediate Intermediate Overall Overall Prediction Prediction CASP11 CASP11

Summary

Created
July 15, 2014
Expires
Max points
100
Description

For this 138 residue CASP11 Target, T0842, we are giving you 4 different server predictions selected by our WeFold collaborators. Resetting the puzzle will cycle between each aligned model and they are available in the Alignment Tool so you can use partial threading between them. Secondary structure predictions are in the puzzle comments.

Top groups

  1. Avatar for Team Germany 21. Team Germany 1 pt. 8,800
  2. Avatar for Foldasaurus 22. Foldasaurus 1 pt. 8,717
  3. Avatar for DSN @ Home 23. DSN @ Home 1 pt. 8,465
  4. Avatar for Team China 24. Team China 1 pt. 7,912
  5. Avatar for incognito group 25. incognito group 1 pt. 0
  1. Avatar for inkycatz 191. inkycatz Lv 1 1 pt. 8,458
  2. Avatar for koh139 192. koh139 Lv 1 1 pt. 8,441
  3. Avatar for StackOverflow 193. StackOverflow Lv 1 1 pt. 8,347
  4. Avatar for vfdavis 194. vfdavis Lv 1 1 pt. 8,322
  5. Avatar for xinshiji 195. xinshiji Lv 1 1 pt. 7,912
  6. Avatar for MiRkIn 196. MiRkIn Lv 1 1 pt. 7,076
  7. Avatar for Mlevanic 197. Mlevanic Lv 1 1 pt. 6,790
  8. Avatar for cassandraberry81897 198. cassandraberry81897 Lv 1 1 pt. 3,338
  9. Avatar for adio8 199. adio8 Lv 1 1 pt. 0
  10. Avatar for Ttk 200. Ttk Lv 1 1 pt. 0

Comments

beta_helix Staff Lv 1

NOTE: Numbering is off as the first 8 residues were trimmed, so this secondary structure prediction might help:
http://rosettaserver.bakerlab.org/results.jsp?id=49312&p=1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

Note that these secondary structure predictions are not necessarily present in the models that have been provided in the puzzle.