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941: CASP11 T0842: WeFold Round

Closed since over 11 years ago

Intermediate Overall Prediction CASP11

Summary

Created
July 15, 2014
Expires
Max points
100
Description

For this 138 residue CASP11 Target, T0842, we are giving you 4 different server predictions selected by our WeFold collaborators. Resetting the puzzle will cycle between each aligned model and they are available in the Alignment Tool so you can use partial threading between them. Secondary structure predictions are in the puzzle comments.

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  1. Avatar for Go Science
    1. Go Science
    100 pts. 9,969
  2. Avatar for Contenders 2. Contenders 81 pts. 9,943
  3. Avatar for Beta Folders 3. Beta Folders 65 pts. 9,937
  4. Avatar for Anthropic Dreams 4. Anthropic Dreams 52 pts. 9,935
  5. Avatar for Void Crushers 5. Void Crushers 41 pts. 9,880
  6. Avatar for Repro-men 6. Repro-men 32 pts. 9,803
  7. Avatar for Russian team 7. Russian team 24 pts. 9,756
  8. Avatar for L'Alliance Francophone 8. L'Alliance Francophone 18 pts. 9,750
  9. Avatar for HMT heritage 9. HMT heritage 14 pts. 9,713
  10. Avatar for Gargleblasters 10. Gargleblasters 10 pts. 9,708
  1. Avatar for tonhuak 201. tonhuak Lv 1 1 pt. 0
  2. Avatar for phallicies 202. phallicies Lv 1 1 pt. 0
  3. Avatar for puxatudo 203. puxatudo Lv 1 1 pt. 0
  4. Avatar for zygato 204. zygato Lv 1 1 pt. 0
  5. Avatar for histon 205. histon Lv 1 1 pt. 0
  6. Avatar for alcor29 206. alcor29 Lv 1 1 pt. 0
  7. Avatar for ingoneato 207. ingoneato Lv 1 1 pt. 0
  8. Avatar for mbinfield 208. mbinfield Lv 1 1 pt. 0
  9. Avatar for packer 209. packer Lv 1 1 pt. 0
  10. Avatar for gdnskye 210. gdnskye Lv 1 1 pt. 0

Comments

beta_helix Staff Lv 1

NOTE: Numbering is off as the first 8 residues were trimmed, so this secondary structure prediction might help:
http://rosettaserver.bakerlab.org/results.jsp?id=49312&p=1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

Note that these secondary structure predictions are not necessarily present in the models that have been provided in the puzzle.