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943: CASP11 T0844: WeFold Round

Closed since over 11 years ago

Intermediate Overall Prediction CASP11

Summary

Created
July 18, 2014
Expires
Max points
100
Description

For this 137 residue CASP11 Target, T0844, we are starting you off with 3 different server predictions selected by our WeFold collaborators. Resetting the puzzle will cycle between each aligned model and they are available in the Alignment Tool so you can use partial threading between them. Secondary structure predictions are in the puzzle comments.

Top groups

  1. Avatar for Deleted group 21. Deleted group pts. 8,737
  2. Avatar for DSN @ Home 22. DSN @ Home 1 pt. 8,347
  3. Avatar for 3HelicesBetterThan1 23. 3HelicesBetterThan1 1 pt. 0
  1. Avatar for turbolag 111. turbolag Lv 1 2 pts. 9,143
  2. Avatar for andrewxc 112. andrewxc Lv 1 2 pts. 9,142
  3. Avatar for Pro Lapser 113. Pro Lapser Lv 1 2 pts. 9,134
  4. Avatar for emdee314 114. emdee314 Lv 1 2 pts. 9,132
  5. Avatar for Mr_Jolty 115. Mr_Jolty Lv 1 2 pts. 9,117
  6. Avatar for Deleted player 116. Deleted player pts. 9,115
  7. Avatar for GreekCivilization 117. GreekCivilization Lv 1 2 pts. 9,100
  8. Avatar for Orcus 118. Orcus Lv 1 1 pt. 9,081
  9. Avatar for Savas 119. Savas Lv 1 1 pt. 9,079
  10. Avatar for Rhyslarn 120. Rhyslarn Lv 1 1 pt. 9,078

Comments

NTree649 Staff Lv 1

NOTE: Numbering is off as the first 8 residues were trimmed, so this secondary structure prediction might help:
http://rosettaserver.bakerlab.org/results.jsp?id=49373&p=1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

Note that these secondary structure predictions are not necessarily present in the models that have been provided in the puzzle.