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943: CASP11 T0844: WeFold Round

Closed since over 11 years ago

Intermediate Overall Prediction CASP11

Summary

Created
July 18, 2014
Expires
Max points
100
Description

For this 137 residue CASP11 Target, T0844, we are starting you off with 3 different server predictions selected by our WeFold collaborators. Resetting the puzzle will cycle between each aligned model and they are available in the Alignment Tool so you can use partial threading between them. Secondary structure predictions are in the puzzle comments.

Top groups

  1. Avatar for Deleted group 21. Deleted group pts. 8,737
  2. Avatar for DSN @ Home 22. DSN @ Home 1 pt. 8,347
  3. Avatar for 3HelicesBetterThan1 23. 3HelicesBetterThan1 1 pt. 0
  1. Avatar for guineapig 141. guineapig Lv 1 1 pt. 8,888
  2. Avatar for Merf 142. Merf Lv 1 1 pt. 8,877
  3. Avatar for Psych0Active 143. Psych0Active Lv 1 1 pt. 8,865
  4. Avatar for parsnip 144. parsnip Lv 1 1 pt. 8,861
  5. Avatar for heyubob2 145. heyubob2 Lv 1 1 pt. 8,856
  6. Avatar for frank_6363 146. frank_6363 Lv 1 1 pt. 8,854
  7. Avatar for biochemist93 147. biochemist93 Lv 1 1 pt. 8,842
  8. Avatar for Johnas Schmidt 148. Johnas Schmidt Lv 1 1 pt. 8,835
  9. Avatar for Steven Pletsch 149. Steven Pletsch Lv 1 1 pt. 8,835
  10. Avatar for martinf 150. martinf Lv 1 1 pt. 8,833

Comments

NTree649 Staff Lv 1

NOTE: Numbering is off as the first 8 residues were trimmed, so this secondary structure prediction might help:
http://rosettaserver.bakerlab.org/results.jsp?id=49373&p=1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

Note that these secondary structure predictions are not necessarily present in the models that have been provided in the puzzle.