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943: CASP11 T0844: WeFold Round

Closed since over 11 years ago

Intermediate Intermediate Overall Overall Prediction Prediction CASP11 CASP11

Summary

Created
July 18, 2014
Expires
Max points
100
Description

For this 137 residue CASP11 Target, T0844, we are starting you off with 3 different server predictions selected by our WeFold collaborators. Resetting the puzzle will cycle between each aligned model and they are available in the Alignment Tool so you can use partial threading between them. Secondary structure predictions are in the puzzle comments.

Top groups

  1. Avatar for Deleted group 21. Deleted group pts. 8,737
  2. Avatar for DSN @ Home 22. DSN @ Home 1 pt. 8,347
  3. Avatar for 3HelicesBetterThan1 23. 3HelicesBetterThan1 1 pt. 0
  1. Avatar for PrettyPony2001 151. PrettyPony2001 Lv 1 1 pt. 8,818
  2. Avatar for lange 152. lange Lv 1 1 pt. 8,804
  3. Avatar for dbuske 153. dbuske Lv 1 1 pt. 8,797
  4. Avatar for cassandraberry81897 154. cassandraberry81897 Lv 1 1 pt. 8,796
  5. Avatar for mattj256 155. mattj256 Lv 1 1 pt. 8,784
  6. Avatar for GaryForbis 156. GaryForbis Lv 1 1 pt. 8,784
  7. Avatar for sftgfop1 157. sftgfop1 Lv 1 1 pt. 8,764
  8. Avatar for danisnotonfire 158. danisnotonfire Lv 1 1 pt. 8,737
  9. Avatar for Kevonni 159. Kevonni Lv 1 1 pt. 8,725
  10. Avatar for ZiiONIC 160. ZiiONIC Lv 1 1 pt. 8,718

Comments

NTree649 Staff Lv 1

NOTE: Numbering is off as the first 8 residues were trimmed, so this secondary structure prediction might help:
http://rosettaserver.bakerlab.org/results.jsp?id=49373&p=1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

Note that these secondary structure predictions are not necessarily present in the models that have been provided in the puzzle.