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943: CASP11 T0844: WeFold Round

Closed since over 11 years ago

Intermediate Overall Prediction CASP11

Summary

Created
July 18, 2014
Expires
Max points
100
Description

For this 137 residue CASP11 Target, T0844, we are starting you off with 3 different server predictions selected by our WeFold collaborators. Resetting the puzzle will cycle between each aligned model and they are available in the Alignment Tool so you can use partial threading between them. Secondary structure predictions are in the puzzle comments.

Top groups

  1. Avatar for Deleted group 21. Deleted group pts. 8,737
  2. Avatar for DSN @ Home 22. DSN @ Home 1 pt. 8,347
  3. Avatar for 3HelicesBetterThan1 23. 3HelicesBetterThan1 1 pt. 0
  1. Avatar for puxatudo 191. puxatudo Lv 1 1 pt. 0
  2. Avatar for histon 192. histon Lv 1 1 pt. 0
  3. Avatar for Takara 193. Takara Lv 1 1 pt. 0
  4. Avatar for drregret1 194. drregret1 Lv 1 1 pt. 0
  5. Avatar for packer 195. packer Lv 1 1 pt. 0

Comments

NTree649 Staff Lv 1

NOTE: Numbering is off as the first 8 residues were trimmed, so this secondary structure prediction might help:
http://rosettaserver.bakerlab.org/results.jsp?id=49373&p=1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

Note that these secondary structure predictions are not necessarily present in the models that have been provided in the puzzle.