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943: CASP11 T0844: WeFold Round

Closed since over 11 years ago

Intermediate Overall Prediction CASP11

Summary

Created
July 18, 2014
Expires
Max points
100
Description

For this 137 residue CASP11 Target, T0844, we are starting you off with 3 different server predictions selected by our WeFold collaborators. Resetting the puzzle will cycle between each aligned model and they are available in the Alignment Tool so you can use partial threading between them. Secondary structure predictions are in the puzzle comments.

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    1. Anthropic Dreams
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  1. Avatar for Tac1 181. Tac1 Lv 1 1 pt. 8,340
  2. Avatar for KCCT12 182. KCCT12 Lv 1 1 pt. 8,325
  3. Avatar for Inkedhands 183. Inkedhands Lv 1 1 pt. 8,313
  4. Avatar for Tarkof 184. Tarkof Lv 1 1 pt. 8,272
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  7. Avatar for multaq 187. multaq Lv 1 1 pt. 3,372
  8. Avatar for natec 188. natec Lv 1 1 pt. 1,410
  9. Avatar for Jaco van As 189. Jaco van As Lv 1 1 pt. 389
  10. Avatar for triple_helix 190. triple_helix Lv 1 1 pt. 0

Comments

NTree649 Staff Lv 1

NOTE: Numbering is off as the first 8 residues were trimmed, so this secondary structure prediction might help:
http://rosettaserver.bakerlab.org/results.jsp?id=49373&p=1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

Note that these secondary structure predictions are not necessarily present in the models that have been provided in the puzzle.