Placeholder image of a protein
Icon representing a puzzle

944: CASP11 T0846: WeFold Round

Closed since over 11 years ago

Intermediate Overall Prediction CASP11

Summary

Created
July 20, 2014
Expires
Max points
100
Description

For this 138 residue CASP11 Target, T0846, we are starting you off with 3 different server predictions selected by our WeFold collaborators. Resetting the puzzle will cycle between each aligned model and they are available in the Alignment Tool so you can use partial threading between them. Secondary structure predictions are in the puzzle comments.

Top groups

  1. Avatar for Void Crushers
    1. Void Crushers
    100 pts. 10,107
  2. Avatar for Go Science 2. Go Science 78 pts. 10,068
  3. Avatar for Contenders 3. Contenders 60 pts. 10,042
  4. Avatar for Beta Folders 4. Beta Folders 45 pts. 10,007
  5. Avatar for Anthropic Dreams 5. Anthropic Dreams 33 pts. 9,932
  6. Avatar for Gargleblasters 6. Gargleblasters 24 pts. 9,907
  7. Avatar for L'Alliance Francophone 7. L'Alliance Francophone 17 pts. 9,742
  8. Avatar for HMT heritage 8. HMT heritage 12 pts. 9,619
  9. Avatar for Repro-men 9. Repro-men 8 pts. 9,603
  10. Avatar for Russian team 10. Russian team 6 pts. 9,574
  1. Avatar for adio8 191. adio8 Lv 1 1 pt. 0
  2. Avatar for mjenuwine 192. mjenuwine Lv 1 1 pt. 0
  3. Avatar for dargo9000 193. dargo9000 Lv 1 1 pt. 0
  4. Avatar for mbinfield 194. mbinfield Lv 1 1 pt. 0
  5. Avatar for viosca 195. viosca Lv 1 1 pt. 0
  6. Avatar for Orcus 196. Orcus Lv 1 1 pt. 0
  7. Avatar for Jaco van As 197. Jaco van As Lv 1 1 pt. 0
  8. Avatar for drregret1 198. drregret1 Lv 1 1 pt. 0
  9. Avatar for phallicies 199. phallicies Lv 1 1 pt. 0
  10. Avatar for Mike Cassidy 200. Mike Cassidy Lv 1 1 pt. 0

Comments

NTree649 Staff Lv 1

NOTE: Numbering is off as the first 8 residues were trimmed, so this secondary structure prediction might help:
http://rosettaserver.bakerlab.org/results.jsp?id=49383&p=1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

Note that these secondary structure predictions are not necessarily present in the models that have been provided in the puzzle.