947: Bonus CASP11 T0848: Quick WeFold Round

Closed since over 11 years ago

Summary

• Created: July 23, 2014
• Expires: July 28, 2014 at 20:00 UTC
• Max points: 100

Description

For this 136 residue CASP11 Target, T0848, we are starting you off with 2 different server predictions selected by our WeFold collaborators. Resetting the puzzle will cycle between each aligned model and they are available in the Alignment Tool so you can use partial threading between them. Additional info and secondary structure predictions are in the puzzle comments.

Top groups

• 21. DSN @ Home 1 pt. 8,621
• 22. Team Schleswig-Holstein 1 pt. 8,620
• 23. Deleted group pts. 7,007
• 24. Boinc.be 1 pt. 3,373

Top soloists

• 161. Pibeagles 1 pt. 8,351
• 162. wuhongyi 1 pt. 8,347
• 163. milan.janosec 1 pt. 8,343
• 164. frank21 1 pt. 8,283
• 165. glaciall 1 pt. 8,113
• 166. stephmau 1 pt. 8,085
• 167. persephone977 1 pt. 8,069
• 168. davsmi9 1 pt. 7,502
• 169. KCCT12 1 pt. 7,420
• 170. EunLiu 1 pt. 7,007

Comments

[fezmania]

NOTE: Numbering is off as the first 24 residues were trimmed (as well as the second half of this CASP target) so these secondary structure predictions might help:
http://rosettaserver.bakerlab.org/results.jsp?id=49400&p=1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

Note that these secondary structure predictions are not necessarily present in the models that have been provided in the puzzle.

[beta_helix]

E stands for "Extended" as the sheet is as extended as the backbone can get.

[brgreening]

A speaker of English would use 'S' for sheet. Who came up with the 'E' for sheet? What language were they speaking?

[wisky]

E stands for "Extended" as the sheet is as extended as the backbone can get.