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949: CASP11 Target Ts818: Sparse Data Contacts

Closed since over 11 years ago

Intermediate Overall Prediction CASP11 Predicted Contacts

Summary

Created
July 26, 2014
Expires
Max points
100
Description

For this target, the CASP11 organizers have provided "sparse" experimental data about possible contacts in the protein. Contacts are scored with the Contact Map filter in this puzzle, and there is an upper limit of 2250 possible points from the filter. The starting structure is an extended chain, and secondary structure predictions can be found below in the puzzle comments.

Top groups

  1. Avatar for foldeRNA 21. foldeRNA 1 pt. 7,113
  2. Avatar for DSN @ Home 22. DSN @ Home 1 pt. 6,164
  3. Avatar for Deleted group 23. Deleted group pts. 957
  1. Avatar for smileyfuntime 131. smileyfuntime Lv 1 1 pt. 7,954
  2. Avatar for Close At Hand 132. Close At Hand Lv 1 1 pt. 7,947
  3. Avatar for NeedMoreCoffee 133. NeedMoreCoffee Lv 1 1 pt. 7,927
  4. Avatar for GreekCivilization 134. GreekCivilization Lv 1 1 pt. 7,889
  5. Avatar for Joryell 135. Joryell Lv 1 1 pt. 7,781
  6. Avatar for nmos1056 136. nmos1056 Lv 1 1 pt. 7,741
  7. Avatar for emdee314 137. emdee314 Lv 1 1 pt. 7,597
  8. Avatar for Pro Lapser 138. Pro Lapser Lv 1 1 pt. 7,593
  9. Avatar for harvardman 139. harvardman Lv 1 1 pt. 7,485
  10. Avatar for VigorousBog 140. VigorousBog Lv 1 1 pt. 7,464

Comments

bkoep Staff Lv 1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.