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949: CASP11 Target Ts818: Sparse Data Contacts

Closed since over 11 years ago

Intermediate Overall Prediction CASP11 Predicted Contacts

Summary

Created
July 26, 2014
Expires
Max points
100
Description

For this target, the CASP11 organizers have provided "sparse" experimental data about possible contacts in the protein. Contacts are scored with the Contact Map filter in this puzzle, and there is an upper limit of 2250 possible points from the filter. The starting structure is an extended chain, and secondary structure predictions can be found below in the puzzle comments.

Top groups

  1. Avatar for foldeRNA 21. foldeRNA 1 pt. 7,113
  2. Avatar for DSN @ Home 22. DSN @ Home 1 pt. 6,164
  3. Avatar for Deleted group 23. Deleted group pts. 957
  1. Avatar for may of rose 171. may of rose Lv 1 1 pt. 4,911
  2. Avatar for whiskeyindiatangotango 172. whiskeyindiatangotango Lv 1 1 pt. 4,897
  3. Avatar for jemiyajj 173. jemiyajj Lv 1 1 pt. 4,695
  4. Avatar for davsmi9 174. davsmi9 Lv 1 1 pt. 4,598
  5. Avatar for zhuizhu 175. zhuizhu Lv 1 1 pt. 4,174
  6. Avatar for auntdeen 176. auntdeen Lv 1 1 pt. 4,095
  7. Avatar for perrya 177. perrya Lv 1 1 pt. 4,026
  8. Avatar for multaq 178. multaq Lv 1 1 pt. 3,594
  9. Avatar for Jetjet 179. Jetjet Lv 1 1 pt. 3,356
  10. Avatar for ManVsYard 180. ManVsYard Lv 1 1 pt. 2,988

Comments

bkoep Staff Lv 1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.