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949: CASP11 Target Ts818: Sparse Data Contacts

Closed since over 11 years ago

Intermediate Intermediate Overall Overall Prediction Prediction CASP11 CASP11 Predicted Contacts Predicted Contacts

Summary

Created
July 26, 2014
Expires
Max points
100
Description

For this target, the CASP11 organizers have provided "sparse" experimental data about possible contacts in the protein. Contacts are scored with the Contact Map filter in this puzzle, and there is an upper limit of 2250 possible points from the filter. The starting structure is an extended chain, and secondary structure predictions can be found below in the puzzle comments.

Top groups

  1. Avatar for foldeRNA 21. foldeRNA 1 pt. 7,113
  2. Avatar for DSN @ Home 22. DSN @ Home 1 pt. 6,164
  3. Avatar for Deleted group 23. Deleted group pts. 957
  1. Avatar for CaliberDied 181. CaliberDied Lv 1 1 pt. 957
  2. Avatar for Darthvader_007 182. Darthvader_007 Lv 1 1 pt. 0
  3. Avatar for cassandraberry81897 183. cassandraberry81897 Lv 1 1 pt. 0
  4. Avatar for Dantoto 184. Dantoto Lv 1 1 pt. 0
  5. Avatar for phi16 185. phi16 Lv 1 1 pt. 0
  6. Avatar for Tyggy Too 186. Tyggy Too Lv 1 1 pt. 0
  7. Avatar for Mlevanic 187. Mlevanic Lv 1 1 pt. 0
  8. Avatar for Simek 188. Simek Lv 1 1 pt. 0
  9. Avatar for jermainiac 189. jermainiac Lv 1 1 pt. 0
  10. Avatar for leehaggis 190. leehaggis Lv 1 1 pt. 0

Comments

bkoep Staff Lv 1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.