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949: CASP11 Target Ts818: Sparse Data Contacts

Closed since over 11 years ago

Intermediate Overall Prediction CASP11 Predicted Contacts

Summary

Created
July 26, 2014
Expires
Max points
100
Description

For this target, the CASP11 organizers have provided "sparse" experimental data about possible contacts in the protein. Contacts are scored with the Contact Map filter in this puzzle, and there is an upper limit of 2250 possible points from the filter. The starting structure is an extended chain, and secondary structure predictions can be found below in the puzzle comments.

Top groups

  1. Avatar for foldeRNA 21. foldeRNA 1 pt. 7,113
  2. Avatar for DSN @ Home 22. DSN @ Home 1 pt. 6,164
  3. Avatar for Deleted group 23. Deleted group pts. 957
  1. Avatar for crpainter 41. crpainter Lv 1 33 pts. 10,337
  2. Avatar for versat82 42. versat82 Lv 1 32 pts. 10,281
  3. Avatar for Ashrai 43. Ashrai Lv 1 31 pts. 10,256
  4. Avatar for bertro 44. bertro Lv 1 30 pts. 10,250
  5. Avatar for BootsMcGraw 45. BootsMcGraw Lv 1 29 pts. 10,246
  6. Avatar for g_b 46. g_b Lv 1 28 pts. 10,228
  7. Avatar for nemo7731 47. nemo7731 Lv 1 27 pts. 10,224
  8. Avatar for smilingone 48. smilingone Lv 1 26 pts. 10,210
  9. Avatar for Skippysk8s 49. Skippysk8s Lv 1 26 pts. 10,189
  10. Avatar for vmapro 50. vmapro Lv 1 25 pts. 10,151

Comments

bkoep Staff Lv 1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.