bkoep Staff Lv 1
Here is the sequence logo predicted by the SAM server:
H = helix
E = sheet
C = loop (or coil)
The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.
951: CASP11 Target Ts824: Sparse Data Contacts
Closed since over 11 years ago
Intermediate Intermediate Overall Overall Prediction Prediction CASP11 CASP11 Predicted Contacts Predicted ContactsSummary
- Created
- July 28, 2014
- Expires
- Max points
- 100
NOTE: The deadline for this target has been extended to cope with a recent server failure.
For this target, the CASP11 organizers have provided "sparse" experimental data about possible contacts in the protein. Contacts are scored with the Contact Map filter in this puzzle, and there is an upper limit of 2875 possible points from the filter. The starting structure is an extended chain, and secondary structure predictions can be found below in the puzzle comments.
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Comments
brgreening Lv 1
Something that could be put in a Lua script to create Secondary structure.
{ { 19, 'h' }, { 20, 'h' }, { 21, 'h' } }
The above just does three segments.