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951: CASP11 Target Ts824: Sparse Data Contacts

Closed since over 11 years ago

Intermediate Overall Prediction CASP11 Predicted Contacts

Summary

Created: July 28, 2014
Expires: August 05, 2014 at 18:03 UTC
Max points: 100

Description

NOTE: The deadline for this target has been extended to cope with a recent server failure.

For this target, the CASP11 organizers have provided "sparse" experimental data about possible contacts in the protein. Contacts are scored with the Contact Map filter in this puzzle, and there is an upper limit of 2875 possible points from the filter. The starting structure is an extended chain, and secondary structure predictions can be found below in the puzzle comments.

Top groups

11. SETI.Germany 4 pts. 10,248
12. Repro-men 2 pts. 10,000
13. Piratenpartei Deutschland 2 pts. 9,330
14. Deleted group pts. 9,122
15. Natural Abilities 1 pt. 9,001
16. foldeRNA 1 pt. 8,897
17. Team Schleswig-Holstein 1 pt. 7,783
18. Italiani Al Lavoro 1 pt. 7,117
19. DSN @ Home 1 pt. 6,426
20. Crunching Family 1 pt. 6,187

31. spdenne Lv 1 37 pts. 10,260
32. Bautho Lv 1 36 pts. 10,248
33. mimi Lv 1 34 pts. 10,236
34. pauldunn Lv 1 33 pts. 10,108
35. Schleicher Lv 1 32 pts. 10,044
36. egran48 Lv 1 31 pts. 10,032
37. dcrwheeler Lv 1 29 pts. 10,019
38. NickyCGS Lv 1 28 pts. 10,000
39. smilingone Lv 1 27 pts. 9,976
40. johnmitch Lv 1 26 pts. 9,973

Comments

bkoep Staff Lv 1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

brgreening Lv 1

August 02, 2014

Something that could be put in a Lua script to create Secondary structure.

{ { 19, 'h' }, { 20, 'h' }, { 21, 'h' } }

The above just does three segments.