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951: CASP11 Target Ts824: Sparse Data Contacts

Closed since over 11 years ago

Intermediate Overall Prediction CASP11 Predicted Contacts

Summary

Created
July 28, 2014
Expires
Max points
100
Description

NOTE: The deadline for this target has been extended to cope with a recent server failure.

For this target, the CASP11 organizers have provided "sparse" experimental data about possible contacts in the protein. Contacts are scored with the Contact Map filter in this puzzle, and there is an upper limit of 2875 possible points from the filter. The starting structure is an extended chain, and secondary structure predictions can be found below in the puzzle comments.

Top groups

  1. Avatar for HMT heritage 21. HMT heritage 1 pt. 0
  1. Avatar for Susume
    1. Susume Lv 1
    100 pts. 11,157
  2. Avatar for Madde 2. Madde Lv 1 97 pts. 11,068
  3. Avatar for Timo van der Laan 3. Timo van der Laan Lv 1 95 pts. 10,987
  4. Avatar for alcor29 4. alcor29 Lv 1 92 pts. 10,797
  5. Avatar for gitwut 5. gitwut Lv 1 89 pts. 10,795
  6. Avatar for mirp 6. mirp Lv 1 86 pts. 10,741
  7. Avatar for nicobul 7. nicobul Lv 1 83 pts. 10,701
  8. Avatar for drumpeter18yrs9yrs 8. drumpeter18yrs9yrs Lv 1 81 pts. 10,696
  9. Avatar for wisky 9. wisky Lv 1 78 pts. 10,688
  10. Avatar for KarenCH 10. KarenCH Lv 1 76 pts. 10,687

Comments

bkoep Staff Lv 1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

brgreening Lv 1

Something that could be put in a Lua script to create Secondary structure.

{ { 19, 'h' }, { 20, 'h' }, { 21, 'h' } }

The above just does three segments.