Placeholder image of a protein
Icon representing a puzzle

951: CASP11 Target Ts824: Sparse Data Contacts

Closed since over 11 years ago

Intermediate Overall Prediction CASP11 Predicted Contacts

Summary

Created
July 28, 2014
Expires
Max points
100
Description

NOTE: The deadline for this target has been extended to cope with a recent server failure.

For this target, the CASP11 organizers have provided "sparse" experimental data about possible contacts in the protein. Contacts are scored with the Contact Map filter in this puzzle, and there is an upper limit of 2875 possible points from the filter. The starting structure is an extended chain, and secondary structure predictions can be found below in the puzzle comments.

Top groups

  1. Avatar for HMT heritage 21. HMT heritage 1 pt. 0
  1. Avatar for Galaxie
    1. Galaxie Lv 1
    100 pts. 11,227
  2. Avatar for MaartenDesnouck 2. MaartenDesnouck Lv 1 87 pts. 11,130
  3. Avatar for jamiexq 3. jamiexq Lv 1 76 pts. 11,122
  4. Avatar for jermainiac 4. jermainiac Lv 1 65 pts. 11,118
  5. Avatar for MurloW 5. MurloW Lv 1 56 pts. 11,116
  6. Avatar for alcor29 6. alcor29 Lv 1 48 pts. 11,112
  7. Avatar for Madde 7. Madde Lv 1 41 pts. 11,025
  8. Avatar for Mike Cassidy 8. Mike Cassidy Lv 1 34 pts. 11,024
  9. Avatar for spmm 9. spmm Lv 1 29 pts. 11,015
  10. Avatar for spdenne 10. spdenne Lv 1 24 pts. 10,946

Comments

bkoep Staff Lv 1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

brgreening Lv 1

Something that could be put in a Lua script to create Secondary structure.

{ { 19, 'h' }, { 20, 'h' }, { 21, 'h' } }

The above just does three segments.