Having a problem playing the new 1853 puzzle, I have yet to complete a full round of mutate, and it's crashing. Happening in both solo and evo. I've recently had the main 0618 update. Here's the end of the log.txt file
core.conformation.Residue: [ WARNING ] Connection atom name (in src): C
core.chemical.AtomICoor: [ WARNING ] IcoorAtomID::atom_id(): Cannot get atom_id for POLYMER_LOWER of residue LEU 92. Returning BOGUS ID instead.
core.conformation.Residue: [ WARNING ] missing an atom: 92 H that depends on a nonexistent polymer connection!
core.conformation.Residue: [ WARNING ] –> generating it using idealized coordinates.
core.conformation.Residue: [ WARNING ] Residue connection id changed when creating a new residue at seqpos 183
core.conformation.Residue: [ WARNING ] ResConnID info stored on the connected residue (residue 184) is now out of date!
core.conformation.Residue: [ WARNING ] Connection atom name (in src): C
core.chemical.AtomICoor: [ WARNING ] IcoorAtomID::atom_id(): Cannot get atom_id for POLYMER_LOWER of residue LEU 183. Returning BOGUS ID instead.
core.conformation.Residue: [ WARNING ] missing an atom: 183 H that depends on a nonexistent polymer connection!
core.conformation.Residue: [ WARNING ] –> generating it using idealized coordinates.
core.conformation.Residue: [ WARNING ] Residue connection id changed when creating a new residue at seqpos 1
core.conformation.Residue: [ WARNING ] ResConnID info stored on the connected residue (residue 2) is now out of date!
core.conformation.Residue: [ WARNING ] Connection atom name (in src): C
core.chemical.AtomICoor: [ WARNING ] IcoorAtomID::atom_id(): Cannot get atom_id for POLYMER_LOWER of residue LEU 1. Returning BOGUS ID instead.
core.conformation.Residue: [ WARNING ] missing an atom: 1 H that depends on a nonexistent polymer connection!
core.conformation.Residue: [ WARNING ] –> generating it using idealized coordinates.
core.conformation.Residue: [ WARNING ] Residue connection id changed when creating a new residue at seqpos 92
core.conformation.Residue: [ WARNING ] ResConnID info stored on the connected residue (residue 93) is now out of date!
core.conformation.Residue: [ WARNING ] Connection atom name (in src): C
core.chemical.AtomICoor: [ WARNING ] IcoorAtomID::atom_id(): Cannot get atom_id for POLYMER_LOWER of residue LEU 92. Returning BOGUS ID instead.
core.conformation.Residue: [ WARNING ] missing an atom: 92 H that depends on a nonexistent polymer connection!
core.conformation.Residue: [ WARNING ] –> generating it using idealized coordinates.
core.conformation.Residue: [ WARNING ] Residue connection id changed when creating a new residue at seqpos 183
core.conformation.Residue: [ WARNING ] ResConnID info stored on the connected residue (residue 184) is now out of date!
core.conformation.Residue: [ WARNING ] Connection atom name (in src): C
core.chemical.AtomICoor: [ WARNING ] IcoorAtomID::atom_id(): Cannot get atom_id for POLYMER_LOWER of residue LEU 183. Returning BOGUS ID instead.
core.conformation.Residue: [ WARNING ] missing an atom: 183 H that depends on a nonexistent polymer connection!
core.conformation.Residue: [ WARNING ] –> generating it using idealized coordinates.
UNHANDLED EXCEPTION
1: no symbol (no line)
2: no symbol (no line)
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16: no symbol (no line)
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21: no symbol (no line)
22: no symbol (no line)
Sending SOPs:
Worked fine earlier when using a MUTATE ONCE long running recipe on DEVPREV yesterday. Win 10 2004 devprev NOT MAIN in my case.
to be honest, I've been having issues with Design puzzles for the last 2 or 3 weeks, I thought it might be recipe specific, but 1853 seems different, I'm just doing basic start game stuff. And of course, I'm not doing anything out of the ordinary on the rest of the laptop, and I should have pointed out I'm running Win10.
in my case running a non mutate glycine hinge presently, when that finishes, will try something with a mutate again. so very basic on my end also on a i3 ( 1st or 2nd gen ) desktop, so very old.
ran several mutating recipe varients using a laptop ( 2nd gen i7 ) on 1853 with no indications of issues. Even got a small score increase from the mutate, but otherwise a-ok. Check your hot air exhaust vents for dust or obstruction of air flow and overclocking WILL CAUSE file corruptions.
Highly recommend removing old thermal paste and reapplying NEW thermal paste on processors playing foldit every year or so. vents usually need cleaning more often then once yearly even if not a smoker. my computers run 24/7/365 unless in maintenance.
Design Puzzles
Hey CharlieFortsConscience–thank you for letting us know about these issues. I have passed it along to the team.
I'm having repeated crashes on 1853 that are not mutate related. Running the new update on Windows 10. I don't know what part of the log would be helpful - here's a portion:
core.conformation.Residue: [ WARNING ] Residue connection id changed when creating a new residue at seqpos 1
core.conformation.Residue: [ WARNING ] ResConnID info stored on the connected residue (residue 2) is now out of date!
core.conformation.Residue: [ WARNING ] Connection atom name (in src): C
core.chemical.AtomICoor: [ WARNING ] IcoorAtomID::atom_id(): Cannot get atom_id for POLYMER_LOWER of residue LEU 1. Returning BOGUS ID instead.
core.conformation.Residue: [ WARNING ] missing an atom: 1 H that depends on a nonexistent polymer connection!
core.conformation.Residue: [ WARNING ] –> generating it using idealized coordinates.
core.conformation.Residue: [ WARNING ] Residue connection id changed when creating a new residue at seqpos 92
core.conformation.Residue: [ WARNING ] ResConnID info stored on the connected residue (residue 93) is now out of date!
core.conformation.Residue: [ WARNING ] Connection atom name (in src): C
core.chemical.AtomICoor: [ WARNING ] IcoorAtomID::atom_id(): Cannot get atom_id for POLYMER_LOWER of residue LEU 92. Returning BOGUS ID instead.
core.conformation.Residue: [ WARNING ] missing an atom: 92 H that depends on a nonexistent polymer connection!
core.conformation.Residue: [ WARNING ] –> generating it using idealized coordinates.
core.conformation.Residue: [ WARNING ] Residue connection id changed when creating a new residue at seqpos 183
core.conformation.Residue: [ WARNING ] ResConnID info stored on the connected residue (residue 184) is now out of date!
core.conformation.Residue: [ WARNING ] Connection atom name (in src): C
core.chemical.AtomICoor: [ WARNING ] IcoorAtomID::atom_id(): Cannot get atom_id for POLYMER_LOWER of residue LEU 183. Returning BOGUS ID instead.
core.conformation.Residue: [ WARNING ] missing an atom: 183 H that depends on a nonexistent polymer connection!
core.conformation.Residue: [ WARNING ] –> generating it using idealized coordinates.
***** ENDING THREAD ActionGlobalMinimize
Can provide the entire log if needed.
The BUNS filter is crashing my client regularly. I've been getting "no symbol" stack traces. Finally Clicking Run resulted in a hopefully useful stack trace:
setting side chain mode to: 2 Show All (Slow)
core.conformation.Residue: [ WARNING ] Residue connection id changed when creating a new residue at seqpos 1
core.conformation.Residue: [ WARNING ] ResConnID info stored on the connected residue (residue 2) is now out of date!
core.conformation.Residue: [ WARNING ] Connection atom name (in src): C
core.chemical.AtomICoor: [ WARNING ] IcoorAtomID::atom_id(): Cannot get atom_id for POLYMER_LOWER of residue LEU 1. Returning BOGUS ID instead.
core.conformation.Residue: [ WARNING ] missing an atom: 1 H that depends on a nonexistent polymer connection!
core.conformation.Residue: [ WARNING ] –> generating it using idealized coordinates.
core.conformation.Residue: [ WARNING ] Residue connection id changed when creating a new residue at seqpos 92
core.conformation.Residue: [ WARNING ] ResConnID info stored on the connected residue (residue 93) is now out of date!
core.conformation.Residue: [ WARNING ] Connection atom name (in src): C
core.chemical.AtomICoor: [ WARNING ] IcoorAtomID::atom_id(): Cannot get atom_id for POLYMER_LOWER of residue LEU 92. Returning BOGUS ID instead.
core.conformation.Residue: [ WARNING ] missing an atom: 92 H that depends on a nonexistent polymer connection!
core.conformation.Residue: [ WARNING ] –> generating it using idealized coordinates.
core.conformation.Residue: [ WARNING ] Residue connection id changed when creating a new residue at seqpos 183
core.conformation.Residue: [ WARNING ] ResConnID info stored on the connected residue (residue 184) is now out of date!
core.conformation.Residue: [ WARNING ] Connection atom name (in src): C
core.chemical.AtomICoor: [ WARNING ] IcoorAtomID::atom_id(): Cannot get atom_id for POLYMER_LOWER of residue LEU 183. Returning BOGUS ID instead.
core.conformation.Residue: [ WARNING ] missing an atom: 183 H that depends on a nonexistent polymer connection!
core.conformation.Residue: [ WARNING ] –> generating it using idealized coordinates.
UNHANDLED EXCEPTION
1: protocols::vardist_solaccess::VarSolDistSasaCalculator::recompute +963 bytes (no line)
2: core::pose::metrics::StructureDependentCalculator::get +20 bytes (no line)
3: core::pose::metrics::PoseMetricContainer::get +74 bytes (no line)
4: core::pose::Pose::metric +21 bytes (no line)
5: protocols::toolbox::pose_metric_calculators::BuriedUnsatisfiedPolarsCalculator::calculate_sasa +1097 bytes (no line)
6: protocols::toolbox::pose_metric_calculators::BuriedUnsatisfiedPolarsCalculator::recompute +784 bytes (no line)
7: interactive::application::appfilter::BuriedUnsatScoreFilter::buns +805 bytes (no line)
8: interactive::application::appfilter::BuriedUnsatScoreFilter::compute +868 bytes (no line)
9: interactive::application::appfilter::BuriedUnsatScoreFilter::apply +84 bytes (no line)
10: interactive::rosetta_util::Filter::apply_filter +593 bytes (no line)
11: interactive::rosetta_util::ReferencePoseInfo::run_filter +140 bytes (no line)
12: standalone::application::FilterWidget::run_filter_internal +193 bytes (no line)
13: standalone::application::FilterWidget::run_filter_callback +48 bytes (no line)
14: interactive::util::detail::checked_fxn_wrapper<void (__thiscall standalone::application::FilterWidget::)(unsigned int)>::operator()<standalone::application::FilterWidget,unsigned int &,void (__thiscall standalone::application::FilterWidget::)(unsigned int),0> +83 bytes (no line)
15: boost::detail::function::void_function_obj_invoker0<boost::_bi::bind_t<boost::_bi::unspecified,interactive::util::detail::checked_fxn_wrapper<void (__thiscall standalone::application::FilterWidget::*)(unsigned int)>,boost::_bi::list2<boost::_bi::value<interactive::util::access_ptr >,boost::_bi::value > >,void>::invoke +32 bytes (no line)
16: boost::function0::operator() +120 bytes (no line)
17: interactive::gui::TextButton::generate_click +98 bytes (no line)
18: interactive::gui::TextButton::on_mouse_up +90 bytes (no line)
19: interactive::gui::TopLevel::on_mouse_up +184 bytes (no line)
20: interactive::guiwrapper::GUIWrapper::generic_mouse_button_func +752 bytes (no line)
21: interactive::util::detail::checked_fxn_wrapper<void (__thiscall interactive::guiwrapper::GUIWrapper::*)(int,bool,int,int)>::operator()<interactive::guiwrapper::win32::Win32Wrapper,int &,bool &,int &,int &,void (__thiscall interactive::guiwrapper::GUIWrapper::*)(int,bool,int,int),0> +95 bytes (no line)
22: boost::detail::function::void_function_obj_invoker0<boost::_bi::bind_t<boost::_bi::unspecified,interactive::util::detail::checked_fxn_wrapper<void (__thiscall interactive::guiwrapper::GUIWrapper::*)(int,bool,int,int)>,boost::_bi::list5<boost::_bi::value<interactive::util::access_ptr >,boost::_bi::value,boost::_bi::value,boost::_bi::value,boost::_bi::value > >,void>::invoke +46 bytes (no line)
23: boost::function0::operator() +120 bytes (no line)
24: interactive::guiwrapper::GUIWrapper::enqueue_event +76 bytes (no line)
25: interactive::guiwrapper::win32::Win32Wrapper::win_mouse_button_func +106 bytes (no line)
26: interactive::guiwrapper::win32::Win32Wrapper::WndProc +1153 bytes (no line)
27: AddClipboardFormatListener +75 bytes (no line)
28: GetClassLongW +1962 bytes (no line)
29: GetSystemMetricsForDpi +4487 bytes (no line)
30: CallWindowProcW +27 bytes (no line)
31: glDebugEntry +3626 bytes (no line)
32: AddClipboardFormatListener +75 bytes (no line)
33: GetClassLongW +1962 bytes (no line)
34: DispatchMessageW +586 bytes (no line)
35: DispatchMessageA +16 bytes (no line)
36: interactive::guiwrapper::win32::Win32Wrapper::start +341 bytes (no line)
37: interactive::application::interactive_main +2622 bytes (no line)
38: game::application::game_main +1321 bytes (no line)
39: library_main +21 bytes (no line)
40: no symbol (no line)
41: no symbol (no line)
42: no symbol (no line)
43: BaseThreadInitThunk +25 bytes (no line)
44: RtlGetAppContainerNamedObjectPath +228 bytes (no line)
45: RtlGetAppContainerNamedObjectPath +180 bytes (no line)
This should be fixed in the next release!
