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1002: 22 Residue Peptide Design

Closed since over 11 years ago

Intermediate Intermediate Overall Overall Design Design

Summary

Created
October 20, 2014
Expires
Max points
100
Description

This puzzle is aimed at designing short peptides that fold into stable structures. We encourage the use of multiple disulfide bonds, but discourage GLY residues, which will score especially poorly here. See the puzzle comments for more information about filters. The Baker lab will run folding predictions on your best designs, and the the ones that perform well will be synthesized and further validated for structural stability. Remember, you can use the Upload for Scientists button for up to 5 designs that you want us to look at, even if they are not the best-scoring solutions!

Top groups

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  6. Avatar for Cell Biology Fall 2014 with Smith 26. Cell Biology Fall 2014 with Smith 1 pt. 8,133
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  1. Avatar for Stevan0989 211. Stevan0989 Lv 1 1 pt. 7,549
  2. Avatar for kogito 212. kogito Lv 1 1 pt. 7,311
  3. Avatar for bbmt 213. bbmt Lv 1 1 pt. 7,267
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  5. Avatar for atlas100 215. atlas100 Lv 1 1 pt. 7,119
  6. Avatar for Icearstorm 216. Icearstorm Lv 1 1 pt. 6,830
  7. Avatar for kindsd 217. kindsd Lv 1 1 pt. 6,790
  8. Avatar for Virgilius 218. Virgilius Lv 1 1 pt. 6,770
  9. Avatar for Dhalion 219. Dhalion Lv 1 1 pt. 6,699
  10. Avatar for franse 220. franse Lv 1 1 pt. 6,593

Comments

bkoep Staff Lv 1

Residue IE Score: Monitors that all PHE, TYR, and TRP residues are scoring well.

Core Existence: Ensures that at least 10% of the residues are buried in the core of your design.

Fragment Score: Scans for parts of your design that are unlikely to fold up naturally. Use Rebuild and Remix tools to fix these regions of your design!

Disulfide Filter: Yields a bonus of up to 1000 points for 2 or 3 disulfide bonds. More than 3 disulfides will incur penalties.