bkoep Staff Lv 1
Residue IE Score: Monitors that all PHE, TYR, and TRP residues are scoring well.
Core Existence: Monomer: Ensures that at least 21 residues are buried in the core of the monomer unit.
Core Existence: Complex: Ensures that at least 54 residues are buried in the core of the entire complex (including the interface between monomer units).
Fragment Score: Scans for parts of your design that are unlikely to fold up naturally. Use Rebuild and Remix tools to fix these regions of your design!
Secondary Structure: Checks that no more than 50% of residues are in helices; penalties are incurred if more than 50% of residues form helices.
Secondary Structure Design: Penalizes all CYS residues. Penalizes GLY, ALA, and PRO residues in helices and sheets.
