Placeholder image of a protein
Icon representing a puzzle

1411: Unsolved De-novo Freestyle 113

Closed since over 8 years ago

Intermediate Overall Design

Summary


Created
August 01, 2017
Expires
Max points
100
Description

The structure of this protein is still unknown. Secondary structure predictions (from PSIPRED) are marked on the starting structure, and provide clues about where the protein might form helices and sheets!



Sequence:


ETRERMEKWVEEVLRRIEEIIKKVTDKEQIEKEIRKLEKELRERIRQEDENSRLNIDVQIDQQDNHDEMRVEIRVELDGHEIRRRINVTK

Top groups


  1. Avatar for Anthropic Dreams 100 pts. 9,933
  2. Avatar for Gargleblasters 2. Gargleblasters 76 pts. 9,925
  3. Avatar for Beta Folders 3. Beta Folders 56 pts. 9,890
  4. Avatar for Go Science 4. Go Science 41 pts. 9,794
  5. Avatar for Marvin's bunch 5. Marvin's bunch 29 pts. 9,785
  6. Avatar for Contenders 6. Contenders 20 pts. 9,732
  7. Avatar for Void Crushers 7. Void Crushers 14 pts. 9,698
  8. Avatar for L'Alliance Francophone 8. L'Alliance Francophone 9 pts. 9,652
  9. Avatar for FoldIt@Netherlands 9. FoldIt@Netherlands 6 pts. 9,585
  10. Avatar for HMT heritage 10. HMT heritage 4 pts. 9,421

  1. Avatar for cbwest 81. cbwest Lv 1 3 pts. 9,133
  2. Avatar for FishKAA 82. FishKAA Lv 1 3 pts. 9,128
  3. Avatar for TastyMunchies 83. TastyMunchies Lv 1 3 pts. 9,120
  4. Avatar for Mydogisa Toelicker 84. Mydogisa Toelicker Lv 1 3 pts. 9,115
  5. Avatar for senor pit 85. senor pit Lv 1 2 pts. 9,088
  6. Avatar for Vincera 86. Vincera Lv 1 2 pts. 9,087
  7. Avatar for froggs554 87. froggs554 Lv 1 2 pts. 9,087
  8. Avatar for benrh 88. benrh Lv 1 2 pts. 9,072
  9. Avatar for pauldunn 89. pauldunn Lv 1 2 pts. 9,062
  10. Avatar for georg137 90. georg137 Lv 1 2 pts. 8,992

Comments


Susume Lv 1

This puzzle is an example where letting us mutate just a few (like maybe 3) residues (of our choosing) might result in an even more stable fold. For example, residues 82-86 IRRRI - 2 oranges separated by 3 blues - make psipred think the final structure is a helix. They might make it fold as a helix too. But I'd be willing to bet it was designed as a sheet. Substituting an orange for the middle R would convince psipred that it was a sheet, and might make it actually fold into a sheet more reliably than the given sequence does.

You could give us the protein with a few mutations allowed as a separate puzzle, if you don't want to mess up the results of whatever experiment you are currently doing with us predicting foldit designs.

You could find any solutions that resemble the original design, run those mutated sequences through Rosetta, and compare the results using only backbone atoms to the original design, to see if you get better funnel-shaped graphs.