Placeholder image of a protein
Icon representing a puzzle

1678: Extra Large Monomer Design

Closed since almost 7 years ago

Intermediate Overall Design

Summary

Created
May 22, 2019
Expires
Max points
100
Description

This puzzle challenges players to design a single-chain protein with 95-120 residues. The starting structure has 95 residues, but more can be added at a cost of 55 points per residue. See the puzzle comments for Objective details. The Baker Lab will run folding predictions on your solutions for this puzzle, and those that perform well will be synthesized in the lab. Remember, you can use the Upload for Scientists button for up to 5 designs that you want us to look at, even if they are not the best-scoring solutions!

Top groups

  1. Avatar for DW 2020 11. DW 2020 1 pt. 13,509
  2. Avatar for Extraterrestrials 2.0 12. Extraterrestrials 2.0 1 pt. 13,258
  3. Avatar for freefolder 13. freefolder 1 pt. 12,191
  4. Avatar for Alpha Rays 14. Alpha Rays 1 pt. 11,770
  1. Avatar for Quench 71. Quench Lv 1 1 pt. 12,955
  2. Avatar for rwillett 72. rwillett Lv 1 1 pt. 12,909
  3. Avatar for martin.szew 73. martin.szew Lv 1 1 pt. 12,856
  4. Avatar for ManVsYard 74. ManVsYard Lv 1 1 pt. 12,846
  5. Avatar for Flagg65a 75. Flagg65a Lv 1 1 pt. 12,773
  6. Avatar for Museka 76. Museka Lv 1 1 pt. 12,614
  7. Avatar for hajtogato 77. hajtogato Lv 1 1 pt. 12,577
  8. Avatar for pfirth 78. pfirth Lv 1 1 pt. 12,508
  9. Avatar for Merf 79. Merf Lv 1 1 pt. 12,499
  10. Avatar for wouterenkinga 80. wouterenkinga Lv 1 1 pt. 12,443

Comments

bkoep Staff Lv 1

Residue IE Score (max +500)
Monitors that all PHE, TYR, and TRP residues are scoring well.

SS Design (max +500)
Penalizes all CYS residues. Penalizes GLY, ALA, SER, THR in helices. Penalizes GLY, ALA in sheets.

Residue Count (max +1375)
Penalizes extra residues inserted beyond the starting 95, at a cost of 55 points per residue. Players may use up to 120 residues in total.

Secondary Structure (max +500)
No more than 50% of residues may form helices. Extra helices are penalized at 10 points per residue.