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2296: Electron Density Reconstruction 38 (please try Trim tool)

Closed since almost 3 years ago

Novice Overall Prediction Electron Density

Summary

Created
April 28, 2023
Expires
Max points
100
Description

The structure of this protein has already been solved and published, but close inspection suggests that there are some problems with the published solution. We'd like to see if Foldit players can use the same electron density data to reconstruct a better model. This one has four copies of the protein in it. It's not as gigantic as 2291, but still big enough that the Trim tool will probably be necessary.

Sequence
RPKLSTKDLALIKADLAEFEARELSSEKILKDTIKEESWSDLDFANDNINQMIGTMKRYQQEILSIDAIKRSSEASADTEAFKKIFKEWSEFKIERIQVTIDLLNGKKDSEAVFKKTYPNQIIFDDVRTNKLQTALNNLKVGYELLDSQK

Top groups

  1. Avatar for Team China 11. Team China 1 pt. 77,272
  2. Avatar for Trinity Biology 12. Trinity Biology 1 pt. 30,566
  1. Avatar for rinze 61. rinze Lv 1 1 pt. 78,179
  2. Avatar for Swapper242 62. Swapper242 Lv 1 1 pt. 78,121
  3. Avatar for apetrides 63. apetrides Lv 1 1 pt. 77,790
  4. Avatar for zo3xiaJonWeinberg 64. zo3xiaJonWeinberg Lv 1 1 pt. 77,272
  5. Avatar for Hillbillie 65. Hillbillie Lv 1 1 pt. 76,715
  6. Avatar for deathbat_87 66. deathbat_87 Lv 1 1 pt. 75,422
  7. Avatar for pfirth 67. pfirth Lv 1 1 pt. 75,227
  8. Avatar for equilibria 68. equilibria Lv 1 1 pt. 74,917
  9. Avatar for Deleted player 69. Deleted player 1 pt. 69,725
  10. Avatar for furi0us 70. furi0us Lv 1 1 pt. 65,065

Comments

LociOiling Lv 1

This one is a teeny 585 segments, with four chains. Chains A, B, and D are identical, with a length of 146 segments each. Chain C starts out the same, but then adds an extra aspartate (D) at the end, for a length of 147 segements.

The chain view looks like this:

A: rpklstkdlalikadlaefearelssekilkdtikeeswsdldfandninqmigtmkryqqeilsidaikrsseasadteafkkifkewsefkieriqvtidllngkkdseavfkktypnqiifddvrtnklqtalnnlkvgyell
B: rpklstkdlalikadlaefearelssekilkdtikeeswsdldfandninqmigtmkryqqeilsidaikrsseasadteafkkifkewsefkieriqvtidllngkkdseavfkktypnqiifddvrtnklqtalnnlkvgyell
C: rpklstkdlalikadlaefearelssekilkdtikeeswsdldfandninqmigtmkryqqeilsidaikrsseasadteafkkifkewsefkieriqvtidllngkkdseavfkktypnqiifddvrtnklqtalnnlkvgyelld
D: rpklstkdlalikadlaefearelssekilkdtikeeswsdldfandninqmigtmkryqqeilsidaikrsseasadteafkkifkewsefkieriqvtidllngkkdseavfkktypnqiifddvrtnklqtalnnlkvgyell

(We have nothing to fear but feare itself.)

Sandrix72 Lv 1

Wishlist about trim:
1) To have lua command for trim and untrim
2) Possibility to merge two or more trimmed solutions if there is no overlap between them